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    LOC4337182 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337182, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337182
    Gene description
    pentatricopeptide repeat-containing protein At1g80550, mitochondrial
    Locus tag
    OSNPB_040643700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337182 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33265805..33269345)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32758824..32762540)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene probable cyclic nucleotide-gated ion channel 6 Neighboring gene uncharacterized LOC9271328 Neighboring gene uncharacterized LOC4337183

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast-nucleus signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondria-nucleus signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g80550, mitochondrial
    Names
    Os04g0643700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33265805..33269345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780403.3 → XP_015635889.1  pentatricopeptide repeat-containing protein At1g80550, mitochondrial

      UniProtKB/TrEMBL
      A2XY64, A3AXZ0, Q0J9M0, Q25A65, Q7XTN4
      Conserved Domains (2) summary
      PLN03218
      Location:178 → 417
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]

    2. XM_015780406.3 → XP_015635892.1  pentatricopeptide repeat-containing protein At1g80550, mitochondrial

      UniProtKB/TrEMBL
      A2XY64, A3AXZ0, Q0J9M0, Q25A65, Q7XTN4
      Conserved Domains (2) summary
      PLN03218
      Location:178 → 417
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:214 → 241
      PPR; PPR repeat [structural motif]

    3. XM_066309493.1 → XP_066165590.1  pentatricopeptide repeat-containing protein At1g80550, mitochondrial

      UniProtKB/TrEMBL
      A3AXZ0, Q0J9M0, Q7XTN4

    4. XM_066309494.1 → XP_066165591.1  pentatricopeptide repeat-containing protein At1g80550, mitochondrial

      UniProtKB/TrEMBL
      A3AXZ0, Q0J9M0, Q7XTN4
    Nucleotide Protein
    Heading Accession and Version

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