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    CWZF7 Cysteine-tryptophan domain-containing zinc finger protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344236, updated on 12-Jul-2024

    Summary

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    Gene symbol
    CWZF7
    Gene description
    Cysteine-tryptophan domain-containing zinc finger protein 7
    Locus tag
    OSNPB_070669800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WG7; OsCW-ZF7
    Expression
    Ubiquitous expression in roots after flowering (RPKM 13.9), roots before flowering (RPKM 12.4) and 6 other tissues See more
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    Genomic context

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    See CWZF7 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28552579..28562895)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28324734..28335078)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344234 Neighboring gene potassium transporter 7-like Neighboring gene pentatricopeptide repeat-containing protein At4g32430, mitochondrial Neighboring gene protein SRC2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-tryptophan domain-containing zinc finger protein 7
    Names
    LOC_Os07g47360
    Os07g0669800
    Protein WIDE GRAIN 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423013.1 → NP_001409942.1  cysteine-tryptophan domain-containing zinc finger protein 7

      Status: VALIDATED

      Source sequence(s)
      AK062892, AK067946, AP014963
      UniProtKB/Swiss-Prot
      A0A0P0X9Z7, Q0D3R9
      UniProtKB/TrEMBL
      B8B5T9, B9FUS9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28552579..28562895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791340.2 → XP_015646826.1  cysteine-tryptophan domain-containing zinc finger protein 7 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0X9Z7, Q0D3R9
      UniProtKB/TrEMBL
      B8B5T9, B9FUS9
      Conserved Domains (2) summary
      PTZ00449
      Location:530 → 646
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam07496
      Location:652 → 698
      zf-CW; CW-type Zinc Finger

    2. XM_015791341.2 → XP_015646827.1  cysteine-tryptophan domain-containing zinc finger protein 7 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0X9Z7, Q0D3R9
      UniProtKB/TrEMBL
      B8B5T9, B9FUS9
      Conserved Domains (2) summary
      PTZ00449
      Location:530 → 646
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam07496
      Location:652 → 698
      zf-CW; CW-type Zinc Finger

    3. XM_066312004.1 → XP_066168101.1  cysteine-tryptophan domain-containing zinc finger protein 7 isoform X1

    4. XM_026027123.2 → XP_025882908.1  cysteine-tryptophan domain-containing zinc finger protein 7 isoform X2

      UniProtKB/TrEMBL
      B8B5T9, B9FUS9
      Conserved Domains (2) summary
      pfam07496
      Location:648 → 694
      zf-CW; CW-type Zinc Finger
      cl25751
      Location:526 → 642
      DUF4045; Domain of unknown function (DUF4045)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0P0X9Z7.2 GenPept UniProtKB/Swiss-Prot:A0A0P0X9Z7

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