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    LOC4332537 mitochondrial import inner membrane translocase subunit TIM22-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332537, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4332537
    Gene description
    mitochondrial import inner membrane translocase subunit TIM22-4
    Locus tag
    OSNPB_030296300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 12.0), roots before flowering (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10419913..10423450, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10368915..10372625, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene uncharacterized LOC9271382 Neighboring gene eukaryotic translation initiation factor 2 subunit alpha homolog Neighboring gene glucan endo-1,3-beta-glucosidase 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mitochondrion targeting sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein insertion into mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TIM22 mitochondrial import inner membrane insertion complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial import inner membrane translocase subunit TIM22-4
    Names
    Os03g0296300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10419913..10423450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776564.3 → XP_015632050.1  mitochondrial import inner membrane translocase subunit TIM22-4 isoform X1

      UniProtKB/TrEMBL
      B8AM05
      Conserved Domains (1) summary
      pfam02466
      Location:62 → 157
      Tim17; Tim17/Tim22/Tim23/Pmp24 family

    2. XM_015776566.3 → XP_015632052.1  mitochondrial import inner membrane translocase subunit TIM22-4 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XHZ5, B8AM05, B9F7U4, Q10MT3
      Conserved Domains (1) summary
      pfam02466
      Location:62 → 156
      Tim17; Tim17/Tim22/Tim23/Pmp24 family
    Nucleotide Protein
    Heading Accession and Version

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