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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029480.1 RefSeqGene
- Range
-
5001..110244
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_886
mRNA and Protein(s)
-
NM_001102.4 → NP_001093.1 alpha-actinin-1 isoform b
See identical proteins and their annotated locations for NP_001093.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
- Source sequence(s)
-
BC003576, BC004984, BI494856, DC321454
- Consensus CDS
-
CCDS9792.1
- UniProtKB/Swiss-Prot
- B3V8S3, B4DHH3, B7TY16, P12814, Q1HE25, Q9BTN1
- UniProtKB/TrEMBL
- A0A024R694, A0A804HK61
- Related
- ENSP00000193403.6, ENST00000193403.11
- Conserved Domains (6) summary
-
- cd00051
Location:750 → 817
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- cd00176
Location:395 → 622
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
- pfam00435
Location:634 → 733
- Spectrin; Spectrin repeat
- pfam08726
Location:822 → 888
- EFhand_Ca_insen; Ca2+ insensitive EF hand
- cd21214
Location:28 → 132
- CH_ACTN_rpt1; first calponin homology (CH) domain found in the alpha-actinin family
- cd21216
Location:136 → 250
- CH_ACTN_rpt2; second calponin homology (CH) domain found in the alpha-actinin family
-
NM_001130004.2 → NP_001123476.1 alpha-actinin-1 isoform a
See identical proteins and their annotated locations for NP_001123476.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
BC004984, BI494856, DC372566, DQ496098
- Consensus CDS
-
CCDS45130.1
- UniProtKB/TrEMBL
-
A0A804HII9
- Related
- ENSP00000377941.4, ENST00000394419.9
- Conserved Domains (6) summary
-
- cd00051
Location:750 → 839
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- cd00176
Location:395 → 622
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
- pfam00435
Location:634 → 733
- Spectrin; Spectrin repeat
- pfam08726
Location:844 → 910
- EFhand_Ca_insen; Ca2+ insensitive EF hand
- cd21214
Location:28 → 132
- CH_ACTN_rpt1; first calponin homology (CH) domain found in the alpha-actinin family
- cd21216
Location:136 → 250
- CH_ACTN_rpt2; second calponin homology (CH) domain found in the alpha-actinin family
-
NM_001130005.2 → NP_001123477.1 alpha-actinin-1 isoform c
See identical proteins and their annotated locations for NP_001123477.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (c) has the same N- and C-termini but is shorter compared to isoform a.
- Source sequence(s)
-
BC003576, BC004984, BI494856, DC321454, EU716325
- Consensus CDS
-
CCDS45129.1
- UniProtKB/TrEMBL
-
A0A804HK61
- Related
- ENSP00000414272.2, ENST00000438964.6
- Conserved Domains (6) summary
-
- COG5126
Location:743 → 847
- FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
- cd00176
Location:395 → 622
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
- pfam00435
Location:634 → 733
- Spectrin; Spectrin repeat
- pfam08726
Location:817 → 883
- EFhand_Ca_insen; Ca2+ insensitive EF hand
- cd21214
Location:28 → 132
- CH_ACTN_rpt1; first calponin homology (CH) domain found in the alpha-actinin family
- cd21216
Location:136 → 250
- CH_ACTN_rpt2; second calponin homology (CH) domain found in the alpha-actinin family
-
NM_001411035.1 → NP_001397964.1 alpha-actinin-1 isoform d
Status: REVIEWED
- Source sequence(s)
-
AL117694
- Consensus CDS
-
CCDS91891.1
- UniProtKB/TrEMBL
- A0A7I2V4Y4, A0A804HK61
- Related
- ENSP00000504355.1, ENST00000679147.1
-
NM_001411036.1 → NP_001397965.1 alpha-actinin-1 isoform e
Status: REVIEWED
- Source sequence(s)
-
AL117694
- Consensus CDS
-
CCDS91890.1
- UniProtKB/TrEMBL
- A0A804HL31, B7Z565
- Related
- ENSP00000508177.1, ENST00000684182.1
-
NM_001424012.1 → NP_001410941.1 alpha-actinin-1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
- Related
- ENSP00000508301.1, ENST00000683342.1
-
NM_001424013.1 → NP_001410942.1 alpha-actinin-1 isoform g
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424014.1 → NP_001410943.1 alpha-actinin-1 isoform h
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
- Related
- ENSP00000439828.2, ENST00000538545.6
-
NM_001424015.1 → NP_001410944.1 alpha-actinin-1 isoform i
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424016.1 → NP_001410945.1 alpha-actinin-1 isoform j
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HKE2
-
NM_001424017.1 → NP_001410946.1 alpha-actinin-1 isoform k
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
B7Z565
-
NM_001424018.1 → NP_001410947.1 alpha-actinin-1 isoform l
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HKE2
-
NM_001424019.1 → NP_001410948.1 alpha-actinin-1 isoform m
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424020.1 → NP_001410949.1 alpha-actinin-1 isoform n
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
- Related
-
ENST00000682522.1
-
NM_001424021.1 → NP_001410950.1 alpha-actinin-1 isoform o
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424022.1 → NP_001410951.1 alpha-actinin-1 isoform p
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
B7Z565
-
NM_001424023.1 → NP_001410952.1 alpha-actinin-1 isoform q
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424024.1 → NP_001410953.1 alpha-actinin-1 isoform r
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HII9
-
NM_001424025.1 → NP_001410954.1 alpha-actinin-1 isoform s
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424026.1 → NP_001410955.1 alpha-actinin-1 isoform e
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
- A0A804HL31, B7Z565
-
NM_001424027.1 → NP_001410956.1 alpha-actinin-1 isoform t
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
- A0A804HK61, A0A804HLF4
- Related
- ENSP00000508329.1, ENST00000682331.1
-
NM_001424028.1 → NP_001410957.1 alpha-actinin-1 isoform u
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
- B7Z565, H9KV75
- Related
- ENSP00000366035.3, ENST00000376839.7
-
NM_001424029.1 → NP_001410958.1 alpha-actinin-1 isoform v
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
A0A804HK61
-
NM_001424030.1 → NP_001410959.1 alpha-actinin-1 isoform w
Status: REVIEWED
- Source sequence(s)
-
AL117694
- UniProtKB/TrEMBL
-
B4DFY0
RNA
-
NR_190048.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
CP068264
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
68874128..68979302 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
63083135..63188360 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)