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    LOC4328457 ribosomal RNA large subunit methyltransferase I [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328457, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4328457
    Gene description
    ribosomal RNA large subunit methyltransferase I
    Locus tag
    OSNPB_020173700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 20.3), leaves after flowering (RPKM 12.0) and 5 other tissues See more
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    Genomic context

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    See LOC4328457 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4034180..4038368)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene choline-phosphate cytidylyltransferase 1 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein 3 Neighboring gene ALA-interacting subunit 1 Neighboring gene succinate-semialdehyde dehydrogenase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328457
    Names
    OSJNBa0073A21.16
    Os02g0173700
    SAM-dependent methyltransferase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4034180..4038368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771003.2 → XP_015626489.1  uncharacterized protein LOC4328457

      UniProtKB/TrEMBL
      A2X1G1
      Conserved Domains (1) summary
      COG1092
      Location:63 → 464
      RlmK; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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