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    LOC4349041 thylakoid lumenal 17.4 kDa protein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349041, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349041
    Gene description
    thylakoid lumenal 17.4 kDa protein, chloroplastic
    Locus tag
    OSNPB_100502000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 74.0), roots after flowering (RPKM 39.5) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19839891..19842615, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19148241..19150908, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein Rf1, mitochondrial-like Neighboring gene uncharacterized LOC4349040 Neighboring gene uncharacterized LOC4349042 Neighboring gene uncharacterized LOC112936602

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    thylakoid lumenal 17.4 kDa protein, chloroplastic
    Names
    Os10g0502000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19839891..19842615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757389.3 → XP_015612875.1  thylakoid lumenal 17.4 kDa protein, chloroplastic

      UniProtKB/TrEMBL
      A2Z925, A3C679, Q8LNF2
      Conserved Domains (1) summary
      COG1357
      Location:96 → 218
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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