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    LOC4343020 uncharacterized LOC4343020 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343020, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343020
    Gene description
    uncharacterized LOC4343020
    Locus tag
    OSNPB_070415200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 26.2), flowers (RPKM 24.9) and 6 other tissues See more
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    Genomic context

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    See LOC4343020 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13098587..13103777)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343017 Neighboring gene F-actin-capping protein subunit alpha Neighboring gene uncharacterized LOC4343022 Neighboring gene uncharacterized LOC107281804 Neighboring gene fatty acyl-CoA reductase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343020
    Names
    OSJNBa0077F02.131
    Os07g0415200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13098587..13103777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789514.2 → XP_015645000.1  uncharacterized protein LOC4343020

      UniProtKB/TrEMBL
      A0A0N7KNB4, A2YKJ6, Q0D6Z9, Q7EYV4
      Conserved Domains (1) summary
      pfam00276
      Location:38 → 91
      Ribosomal_L23; Ribosomal protein L23
    Nucleotide Protein
    Heading Accession and Version

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