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    ATXN2 ataxin 2 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102572215, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ATXN2
    Gene description
    ataxin 2
    See related
    EnsemblRapid:ENSAMIG00015009511
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Also known as
    ataxin-2
    Orthologs
    human mouse all
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    Genomic context

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    See ATXN2 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 10 NC_081833.1 (3587819..3654559, complement)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709599.1 (11555603..11622112)

    Chromosome 10 - NC_081833.1Genomic Context describing neighboring genes Neighboring gene cut like homeobox 2 Neighboring gene SH2B adaptor protein 3 Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene uncharacterized LOC109282988 Neighboring gene BRCA1 associated protein Neighboring gene acyl-CoA dehydrogenase family member 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081833.1 Reference rAllMis1 Primary Assembly

      Range
      3587819..3654559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014598476.3 → XP_014453962.1  ataxin-2 isoform X8

      UniProtKB/TrEMBL
      A0A151NSG4
      Related
      ENSAMIP00015012591.1, ENSAMIT00015018336.1
      Conserved Domains (3) summary
      pfam06741
      Location:144 → 205
      LsmAD; LsmAD domain
      pfam07145
      Location:642 → 658
      PAM2; Ataxin-2 C-terminal region
      pfam14438
      Location:2 → 72
      SM-ATX; Ataxin 2 SM domain

    2. XM_059713367.1 → XP_059569350.1  ataxin-2 isoform X8

      UniProtKB/TrEMBL
      A0A151NSG4
      Related
      ENSAMIP00015012546.1, ENSAMIT00015018291.1

    3. XM_059713363.1 → XP_059569346.1  ataxin-2 isoform X2

      UniProtKB/TrEMBL
      A0A151NSG4
      Related
      ENSAMIP00015012587.1, ENSAMIT00015018332.1

    4. XM_019486818.2 → XP_019342363.1  ataxin-2 isoform X9

      UniProtKB/TrEMBL
      A0A151NS83

    5. XM_059713366.1 → XP_059569349.1  ataxin-2 isoform X7

      UniProtKB/TrEMBL
      A0A151NS83
      Related
      ENSAMIP00015012463.1, ENSAMIT00015018208.1

    6. XM_014598479.3 → XP_014453965.1  ataxin-2 isoform X5

      UniProtKB/TrEMBL
      A0A151NSG4
      Conserved Domains (3) summary
      pfam06741
      Location:144 → 205
      LsmAD; LsmAD domain
      pfam07145
      Location:601 → 617
      PAM2; Ataxin-2 C-terminal region
      pfam14438
      Location:2 → 72
      SM-ATX; Ataxin 2 SM domain

    7. XM_014598478.3 → XP_014453964.1  ataxin-2 isoform X4

      UniProtKB/TrEMBL
      A0A151NTA3
      Related
      ENSAMIP00015012565.1, ENSAMIT00015018310.1
      Conserved Domains (3) summary
      pfam06741
      Location:144 → 205
      LsmAD; LsmAD domain
      pfam07145
      Location:642 → 658
      PAM2; Ataxin-2 C-terminal region
      pfam14438
      Location:2 → 72
      SM-ATX; Ataxin 2 SM domain

    8. XM_014598477.3 → XP_014453963.1  ataxin-2 isoform X1

      UniProtKB/TrEMBL
      A0A151NSD0
      Related
      ENSAMIP00015012581.1, ENSAMIT00015018326.1
      Conserved Domains (3) summary
      pfam06741
      Location:144 → 205
      LsmAD; LsmAD domain
      pfam07145
      Location:642 → 658
      PAM2; Ataxin-2 C-terminal region
      pfam14438
      Location:2 → 72
      SM-ATX; Ataxin 2 SM domain

    9. XM_059713364.1 → XP_059569347.1  ataxin-2 isoform X3

      UniProtKB/TrEMBL
      A0A151NTA3

    10. XM_059713365.1 → XP_059569348.1  ataxin-2 isoform X6

      UniProtKB/TrEMBL
      A0A151NSG4
    Nucleotide Protein
    Heading Accession and Version

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