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    LOC101882267 zinc finger protein 501-like [ Danio rerio (zebrafish) ]

    Gene ID: 101882267, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC101882267
    Gene description
    zinc finger protein 501-like
    See related
    Ensembl:ENSDARG00000099172
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    See LOC101882267 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (6894595..6915162, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (7008836..7018084, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF71.1-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene zinc finger protein 135-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene zinc finger protein 135-like Neighboring gene zinc finger protein 239-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    gastrula zinc finger protein XlCGF52.1-like; zinc finger protein 501-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      6894595..6915162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474876.1 → XP_021330551.1  zinc finger protein 501-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q5P7
      Conserved Domains (3) summary
      COG5048
      Location:19 → 328
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:244 → 322
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:26 → 46
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_021474875.1 → XP_021330550.1  zinc finger protein 501-like isoform X1

      UniProtKB/TrEMBL
      A0A0G2L6G1, A0A8M9QAV0
      Related
      ENSDARP00000140361.2, ENSDART00000168797.2
      Conserved Domains (2) summary
      COG5048
      Location:44 → 353
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:51 → 71
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394517.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      40454..49503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471346.1 → XP_021327021.1  gastrula zinc finger protein XlCGF52.1-like isoform X1

      UniProtKB/TrEMBL
      A0A8M9PXK4
      Conserved Domains (2) summary
      COG5048
      Location:37 → 353
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:51 → 71
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395225.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      33534..53465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473936.1 → XP_021329611.1  zinc finger protein 501-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q4A5
      Conserved Domains (3) summary
      COG5048
      Location:19 → 328
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:244 → 322
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:26 → 46
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_005164385.4 → XP_005164442.3  zinc finger protein 501-like isoform X3

      UniProtKB/TrEMBL
      A0A8M2BBN3
      Conserved Domains (2) summary
      COG5048
      Location:68 → 377
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:75 → 95
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
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