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    LOC4350213 ankyrin repeat-containing protein At5g02620 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350213, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350213
    Gene description
    ankyrin repeat-containing protein At5g02620
    Locus tag
    OSNPB_110251400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350213 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8596391..8603082, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (8163385..8170147, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353922 Neighboring gene ankyrin repeat-containing protein ITN1 Neighboring gene ankyrin repeat-containing protein At5g02620 Neighboring gene uncharacterized LOC136354087 Neighboring gene ankyrin repeat-containing protein NPR4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat-containing protein At5g02620
    Names
    Os11g0251400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8596391..8603082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761403.2 → XP_015616889.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B8BJX4, B9GA76, Q53JM5
      Conserved Domains (3) summary
      sd00045
      Location:266 → 294
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:268 → 361
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:427 → 534
      PGG; Domain of unknown function

    2. XM_066305722.1 → XP_066161819.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B9GA76, Q53JM5

    3. XM_066305719.1 → XP_066161816.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B9GA76, Q53JM5

    4. XM_015761404.2 → XP_015616890.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B8BJX4, B9GA76, Q53JM5
      Conserved Domains (3) summary
      sd00045
      Location:266 → 294
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:268 → 361
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:427 → 534
      PGG; Domain of unknown function

    5. XM_015761400.2 → XP_015616886.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B8BJX4, B9GA76, Q53JM5
      Conserved Domains (3) summary
      sd00045
      Location:266 → 294
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:268 → 361
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:427 → 534
      PGG; Domain of unknown function

    6. XM_066305721.1 → XP_066161818.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B9GA76, Q53JM5

    7. XM_066305720.1 → XP_066161817.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0Y1N3, B9GA76, Q53JM5
    Nucleotide Protein
    Heading Accession and Version

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