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    APL32_gp1 polyprotein [ Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN ]

    Gene ID: 26039972, updated on 7-May-2023

    Summary

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    Gene symbol
    APL32_gp1
    Gene description
    polyprotein
    Locus tag
    APL32_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN (strain: Kagoshima-2-24-KoV/2015/JPN, nat-host: Bos taurus)
    Lineage
    Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus
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    Genomic context

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    Sequence:
    NC_027918.1 (804..8312)

    NC_027918.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_027918.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Detection of novel kobu-like viruses in Japanese black cattle in Japan. Otomaru K, et al. J Vet Med Sci, 2016 Feb. PMID 26369290, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    L
    VP0
    VP3
    VP1
    2A
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_027918.1 Reference assembly

      Range
      804..8312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009165594.1 polyprotein [Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0M5N6H6
      Conserved Domains (5) summary
      cd00205
      Location:362 → 522
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1869 → 2002
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1503 → 1606
      RNA_helicase; RNA helicase
      cl02808
      Location:2045 → 2496
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl17190
      Location:1472 → 1532
      NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

    2. YP_009167347.1 L

    3. YP_009167348.1 VP0

      Conserved Domains (1) summary
      cd00205
      Location:214 → 374
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. YP_009167349.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:46 → 208
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_009167350.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:92 → 231
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_009167351.1 2A

    7. YP_009167352.1 2B

    8. YP_009167353.1 2C

      Conserved Domains (2) summary
      pfam00910
      Location:128 → 231
      RNA_helicase; RNA helicase
      cl17190
      Location:97 → 157
      NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

    9. YP_009167354.1 3A

    10. YP_009167355.1 3B

    11. YP_009167356.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:33 → 166
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. YP_009167357.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:17 → 468
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
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