GEO help: Mouse over screen elements for information.
Status
Public on Feb 07, 2010
Title
Oxford Gene Technology Chip2 Salmonella typhimurium microarray SL1344 strain product code: 010021
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Manufacturer
Oxford Gene Technologies (OGT)
Manufacture protocol
60bp oligonucleotide probes spaced approximately 60bp apart throughout the genome (42,021 for the genome, additional probes for the three plasmids). Probes were evenly distributed between strands. Probes were synthesised on the glass surface by ink jet printer which deposits phosphoramidites onto the glass (ink-jet in-situ synthesis) followed by coupling and repeat of the cycle. Probes are spotted onto standard 1 by 3 microscope slides with four arrays per slide.
Submission date
Feb 04, 2010
Last update date
Feb 07, 2010
Contact name
Brian Coombes
E-mail(s)
coombes@mcmaster.ca Phone
905-525-9140
URL
http://www.coombeslab.com Organization name
McMaster University
Department
Biochemistry & Biomedical Sciences
Lab
HSC-4H17
Street address
1200 Main St. West
City
Hamilton
State/province
Ontario
ZIP/Postal code
L8N 3Z5
Country
Canada
Samples (67)
GSM506607 , GSM506608 , GSM506609 , GSM506610 , GSM875795 , GSM875796
GSM875797 ,
GSM875798 ,
GSM875799 ,
GSM875800 ,
GSM875801 ,
GSM875802 ,
GSM875803 ,
GSM875804 ,
GSM947131 ,
GSM947132 ,
GSM947133 ,
GSM947134 ,
GSM947135 ,
GSM947136 ,
GSM947137 ,
GSM947138 ,
GSM947139 ,
GSM947140 ,
GSM947141 ,
GSM947142 ,
GSM1209621 ,
GSM1209622 ,
GSM1209623 ,
GSM1209624 ,
GSM1209625 ,
GSM1209626 ,
GSM1209627 ,
GSM1209628 ,
GSM1209629 ,
GSM1209630 ,
GSM1209631 ,
GSM1209632 ,
GSM1209633 ,
GSM1261645 ,
GSM1261646 ,
GSM1261647 ,
GSM1261648 ,
GSM1261649 ,
GSM1261650 ,
GSM1618739 ,
GSM1618740 ,
GSM2560871 ,
GSM2560874 ,
GSM2560877 ,
GSM2560880 ,
GSM2560882 ,
GSM2560885 ,
GSM2560887 ,
GSM2560890 ,
GSM2560892 ,
GSM2560894 ,
GSM2560897 ,
GSM2560900 ,
GSM2560902 ,
GSM2560905 ,
GSM2560908 ,
GSM2560911 ,
GSM2560913 ,
GSM2560916 ,
GSM2560918 ,
GSM2560921 Series (8)
GSE20192 ChIP-chip profiling of SsrB in Salmonella enterica sv. Typhimurium
GSE35826 ChIP-chip of LeuO, H-NS and RNA Polymerase (RNAP) in Salmonella enterica serovar Typhimurium strain SL1344
GSE35827 ChIP-chip of RNA Polymerase (RNAP) and RpoD in Salmonella enterica serovar Typhimurium strain SL1344
GSE38661 Fis occupancy along the Salmonella enterica serovar Typhimurium SL1344 fis::3XFlag strain grown in different aeration regimes.
GSE49914 ChIP-on-chip of OmpR binding in Salmonella enterica serovar Typhimurium strain SL1344 and E.scherichia coli strain CSH50 at pH 7 and pH 4.5 including analysis of OmpR binding in SL1344 in the absence and presence of novobiocin (25 μg/ml)
GSE52235 Gene expression analysis of Salmonella enterica serovar Typhimurium strain SL1344 swap
GSE66288 ChIP-chip analysis of CspC binding in Salmonella enterica serovar Typhimurium strain SL1344
GSE97283 ChIP-chip analysis of RNAP and Sigma factor binding to the Salmonella enterica serovar Typhimurium chromosome
Data table header descriptions ID Agilent feature number
SEQUENCE SL1344 nucleotide
LOCUS_SL1344 Sanger SL1344 annotation gene locus ID
LOCUS_STRAND Sanger SL1344 annotation
PROBE_CONTEXT Probe falls IGR', within, 5'-IGR-overlap, or 3-'IGR-overlap
LOCUS_LT2 S. enterica Typhimurium strain LT2 locus ID:common gene name
Data table ID SEQUENCE LOCUS_SL1344 LOCUS_STRAND PROBE_CONTEXT LOCUS_LT2 16939
GCAGATACTTTAACCAATATAGGAATACAAGACAGACAAATAAAAATGACAGAGTACACA
SL0001
+
5'-IGR-overlap
STM0001:thrL
17217
TGAACCGCATCAGCACCACCACCATTACCACCATCACCATTACCACAGGTAACGGTGCGG
SL0001
+
within
STM0001:thrL
44692
GGCTTTTTTTTCGACCAGAGATCACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGG
SL0002
+
5'-IGR-overlap
STM0002:thrA
12664
CAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAAGGGC
SL0002
+
within
STM0002:thrA
29894
ATGCTTTGCCGAATATCAGCGATGCAGAACGTATTTTTTCTGACCTGCTCGCAGGACTTG
SL0002
+
within
STM0002:thrA
34330
GTTGAAAATGGTTGTCGAACAAGAATTCGCTCAGATCAAACATGTTCTGCATGGTATCAG
SL0002
+
within
STM0002:thrA
10762
GCGCTGATTTGCCGTGGCGAAAAAATGTCGATCGCGATTATGGCGGGACTTCTGGAGGCG
SL0002
+
within
STM0002:thrA
23681
GATCGATCCGGTAGAAAAATTGCTGGCGGTGGGCCATTACCTTGAATCTACCGTCGATAT
SL0002
+
within
STM0002:thrA
17520
TTTACCGCCGGTAATGAAAAGGGTGAACTGGTGGTGCTGGGCCGTAATGGTTCCGACTAT
SL0002
+
within
STM0002:thrA
21024
GGACGCCAGGCTGCTGAAATCGATGTCCTACCAGGAAGCGATGGAACTCTCTTACTTCGG
SL0002
+
within
STM0002:thrA
10309
CACCATTACGCCCATCGCCCAGTTCCAGATCCCCTGTCTGATTAAAAATACCGGTAATCC
SL0002
+
within
STM0002:thrA
12126
CTCATTACCCAGTCCTCCTCTGAGTACAGCATCAGTTTCTGTGTGCCGCAGAGTGACTGC
SL0002
+
within
STM0002:thrA
38615
GATGCAGGATGAGTTCTATCTGGAGCTGAAAGAGGGGCTGCTGGAGCCGCTGGCGGTTAC
SL0002
+
within
STM0002:thrA
127
GCGGGTAACGCACCAGATGCTGTTCAATACCGATCAGGTGATTGAAGTGTTTGTCATTGG
SL0002
+
within
STM0002:thrA
34913
GCTACTGGAACAGCTTAAACGTCAGCAAACCTGGCTGAAGAACAAGCACATCGATCTACG
SL0002
+
within
STM0002:thrA
7101
GTGGCGAACTCAAAGGCGTTGCTAACCAATGTGCATGGCCTGAATCTGGACAACTGGCAG
SL0002
+
within
STM0002:thrA
41333
GACGCTTAATTCGCCTGGTGAAAGAATATCATCTACTCAATCCGGTGATTGTTGATTGTA
SL0002
+
within
STM0002:thrA
40970
GCGTGAAGGGTTCCATGTGGTGACGCCAAACAAGAAAGCGAACACCTCGTCAATGGACTA
SL0002
+
within
STM0002:thrA
2555
CCGGTAATCGAAAACCTGCAAAACCTGCTGAATGCCGGTGATGAACTGCAAAAATTTTCC
SL0002
+
within
STM0002:thrA
41706
CTCTCTTTTATTTTCGGTAAACTGGAAGAGGGGATGAGTCTCTCACAGGCGACCGCCCTG
SL0002
+
within
STM0002:thrA
43452 4102 Kbytes .Supplementary data files not provided
Less...
More...