GEO help: Mouse over screen elements for information.
Status
Public on Jun 03, 2010
Title
Agilent-scanner-UNC-custom-4X44K-without-Virus
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent
Manufacture protocol
Agilent printing protocol
Submission date
Jun 02, 2010
Last update date
Jul 17, 2015
Contact name
Charles M. Perou
E-mail(s)
cperou@med.unc.edu Organization name
University of North Carolina at Chapel Hill
Department
Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address
12-044 Lineberger Comprehensive Cancer Center CB# 7295
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-7264
Country
USA
Samples (240)
GSM533645 , GSM533646 , GSM533647 , GSM533648 , GSM533649 , GSM533650
GSM533651 ,
GSM533652 ,
GSM533653 ,
GSM533654 ,
GSM533655 ,
GSM714334 ,
GSM714335 ,
GSM714336 ,
GSM714337 ,
GSM714338 ,
GSM714339 ,
GSM714340 ,
GSM714341 ,
GSM714342 ,
GSM714344 ,
GSM722433 ,
GSM722434 ,
GSM722435 ,
GSM722436 ,
GSM722437 ,
GSM722438 ,
GSM722439 ,
GSM722440 ,
GSM722441 ,
GSM722442 ,
GSM722443 ,
GSM722444 ,
GSM722445 ,
GSM722446 ,
GSM722447 ,
GSM722448 ,
GSM722449 ,
GSM722450 ,
GSM722451 ,
GSM722452 ,
GSM722453 ,
GSM722454 ,
GSM722455 ,
GSM722456 ,
GSM823621 ,
GSM823622 ,
GSM823623 ,
GSM823624 ,
GSM823625 ,
GSM823626 ,
GSM823627 ,
GSM823628 ,
GSM823629 ,
GSM823630 ,
GSM823631 ,
GSM823632 ,
GSM823633 ,
GSM823634 ,
GSM823635 ,
GSM823636 ,
GSM823637 ,
GSM823638 ,
GSM823639 ,
GSM823640 ,
GSM823641 ,
GSM823642 ,
GSM823643 ,
GSM823644 ,
GSM823645 ,
GSM823646 ,
GSM823647 ,
GSM823648 ,
GSM823649 ,
GSM823650 ,
GSM823651 ,
GSM823652 ,
GSM823653 ,
GSM823654 ,
GSM823655 ,
GSM823656 ,
GSM823657 ,
GSM823658 ,
GSM823659 ,
GSM912025 ,
GSM912026 ,
GSM912027 ,
GSM912028 ,
GSM912029 ,
GSM912030 ,
GSM912031 ,
GSM912032 ,
GSM912033 ,
GSM912034 ,
GSM912035 ,
GSM912036 ,
GSM912037 ,
GSM912038 ,
GSM912039 ,
GSM912040 ,
GSM912041 ,
GSM912042 ,
GSM912043 ,
GSM912044 ,
GSM912045 ,
GSM912046 ,
GSM912047 ,
GSM912048 ,
GSM912049 ,
GSM912127 ,
GSM912128 ,
GSM912129 ,
GSM912130 ,
GSM912131 ,
GSM912132 ,
GSM912133 ,
GSM912134 ,
GSM912135 ,
GSM912136 ,
GSM912137 ,
GSM912138 ,
GSM912139 ,
GSM912140 ,
GSM912141 ,
GSM912142 ,
GSM912143 ,
GSM912144 ,
GSM912145 ,
GSM912146 ,
GSM912147 ,
GSM912148 ,
GSM912149 ,
GSM912150 ,
GSM912176 ,
GSM912177 ,
GSM912178 ,
GSM912179 ,
GSM912180 ,
GSM912181 ,
GSM912182 ,
GSM912183 ,
GSM912184 ,
GSM912185 ,
GSM912186 ,
GSM912187 ,
GSM912188 ,
GSM912189 ,
GSM912190 ,
GSM912191 ,
GSM912192 ,
GSM912193 ,
GSM912194 ,
GSM912195 ,
GSM912196 ,
GSM1147069 ,
GSM1147070 ,
GSM1147071 ,
GSM1147072 ,
GSM1147073 ,
GSM1221000 ,
GSM1221001 ,
GSM1221002 ,
GSM1221003 ,
GSM1221004 ,
GSM1221005 ,
GSM1221006 ,
GSM1221007 ,
GSM1221008 ,
GSM1221009 ,
GSM1227966 ,
GSM1227967 ,
GSM1227968 ,
GSM1227969 ,
GSM1227970 ,
GSM1227971 ,
GSM1227972 ,
GSM1227973 ,
GSM1227974 ,
GSM1227975 ,
GSM1227976 ,
GSM1227977 ,
GSM1227978 ,
GSM1227979 ,
GSM1227980 ,
GSM1227981 ,
GSM1227982 ,
GSM1227983 ,
GSM1324847 ,
GSM1324848 ,
GSM1324849 ,
GSM1324850 ,
GSM1324851 ,
GSM1324852 ,
GSM1324853 ,
GSM1324854 ,
GSM1324866 ,
GSM1324867 ,
GSM1324868 ,
GSM1324869 ,
GSM1324870 ,
GSM1324871 ,
GSM1324872 ,
GSM1324873 ,
GSM1324874 ,
GSM1324875 ,
GSM1324876 ,
GSM1324877 ,
GSM1326324 ,
GSM1326325 ,
GSM1326326 ,
GSM1326327 ,
GSM1326328 ,
GSM1326329 ,
GSM1326330 ,
GSM1326331 ,
GSM1326332 ,
GSM1326333 ,
GSM1326334 ,
GSM3346266 ,
GSM3346267 ,
GSM3346268 ,
GSM3346269 ,
GSM3346270 ,
GSM3346271 ,
GSM3346272 ,
GSM3346273 ,
GSM3346274 ,
GSM3346275 ,
GSM3346276 ,
GSM3346277 ,
GSM3346278 ,
GSM3346279 ,
GSM3346280 ,
GSM3346281 ,
GSM3346282 ,
GSM3346283 ,
GSM3346284 ,
GSM3346285 ,
GSM3346286 ,
GSM3346287 Series (13)
GSE21371 Tumor Suppressor Role for the c-Myb Oncogene in Luminal Breast Cancer
GSE31589 Expression of Epithelial-to-Mesenchymal Transition (EMT)-associated genes in extratumoral microenvironment predicts poor clinical outcome in breast cancer patients
GSE31870 Maintenance of Hormone Responsiveness in Luminal Breast Cancers by Suppression of Notch
GSE33403 Oncogenic PI3K mutations lead to NF-kB-dependent cytokine expression following growth
GSE37145 Vascular properties of breast cancer intrinsic subtypes
GSE47358 Novel role of Engrailed 1 as pro-survival transcription factor in basal-like breast cancer and engineering of interference peptides to block its oncogenic function
GSE50550 Enhancer Remodeling during Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacologic Targeting of the P-TEFb Complex
GSE54713 Cell state transitions regulated by Slug are critical for tissue regeneration and tumor initiation [Agilent microarray samples]
GSE54735 Cell state transitions regulated by Slug are critical for tissue regeneration and tumor initiation
GSE55070 Primary breast tumor-derived cellular models: characterization of tumorigenic, metastatic, and cancer-associated fibroblasts in dissociated tumor (DT) cultures
GSE55399 Efficacy of carboplatin alone and in combination with ABT888 in intracranial murine models of BRCA-mutated and BRCA-wild-type triple negative breast cancer
GSE118741 Identification of Jun loss that promotes resistance to HDAC inhibitor Entinostat through Myc signaling in Luminal breast cancer [cell line]
GSE118744 Identification of Jun loss that promotes resistance to HDAC inhibitor Entinostat through Myc signaling in Luminal breast cancer
Relations Alternative to
GPL20311 ([probe name version])
Data table header descriptions ID NAME probe name at UNC microarray database
Agilent_probe_name Agilent probe name
Refseq ID Refseq ID
Genebank Accession Genebank accession number
Gene Symbol Gene Symbol
Gene Description Gene Description
Chromosome Number Chromosome Number
Chromosome Map Location Chromosome Map Location
SEQUENCE Chromosome Coordinates Chromosome Coordinates
DCC Gene Symbol DCC Gene Symbol from TCGA project
ORF_LIST Entrez Gene Link
SPOT_ID
Data table ID NAME Agilent_probe_name Refseq ID Genebank Accession Gene Symbol Gene Description Chromosome Number Chromosome Map Location SEQUENCE Chromosome Coordinates DCC Gene Symbol ORF_LIST SPOT_ID 1
GE_BRIGHTCORNER
GE_BRIGHTCORNER
control
2
DARKCORNER
DARKCORNER
control
3
DARKCORNER
DARKCORNER
control
4
DARKCORNER
DARKCORNER
control
5
DARKCORNER
DARKCORNER
control
6
DARKCORNER
DARKCORNER
control
7
DARKCORNER
DARKCORNER
control
8
DARKCORNER
DARKCORNER
control
9
DARKCORNER
DARKCORNER
control
10
DARKCORNER
DARKCORNER
control
11
DARKCORNER
DARKCORNER
control
12
AGI_HUM1_OLIGO_A_23_P87556
A_23_P87556
NM_153634.2
CPNE8
copine VIII
12
12q12
GTAGGTGTTGGACCAGCAGAATTTGATGCAATGGTCGAATTGGATGGAGATGATGTAAGA
[36.1:12:37355814-37350839:-]
CPNE8
CPNE8 13
AGI_HUM1_OLIGO_A_24_P399454
A_24_P399454
NM_138568.2
EXOC3L2
exocyst complex component 3-like 2
19
19q13.32
CAGACATCCCTGTGCCCCGCCCATCTTTCTGTCTCAGCCTCCCTCTCTTCCTGGGCCGCC
[36.1:19:50408316-50408255:-]
EXOC3L2
EXOC3L2 14
AGI_HUM1_OLIGO_A_23_P350172
A_23_P350172
NM_001098638.1|NM_182969.1
RNF169|XRRA1
ring finger protein 169|X-ray radiation resistance associated 1
11|11
11q13.4|11q13.4
GAAGCCAAGGCAAAGCAAGGTTTGTTCATCTTCCTTTCCTGTCATTTAAGGTAAAACAGG
[36.1:11:74230385-74230444:+]
RNF169;XRRA1
RNF169 ; XRRA1 15
AGI_HUM1_OLIGO_A_24_P93887
A_24_P93887
NM_017592.1
MED29
mediator complex subunit 29
19
19q13.2
CTCCTGTCCTGGACCCCACGTCTGCAAGGAAACCCTAGGACCATGGATACCTCTGTGATT
[36.1:19:44581315-44581374:+]
MED29
MED29 16
AGI_HUM1_OLIGO_A_23_P16908
A_23_P16908
NM_198963.1
DHX57
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
2
2p22.1
GTGTCCTCGAGGATCCCGGATCATCAGCACAATTGTGAAACTTGTCACCACACAATAAAA
[36.1:2:38879003-38878942:-]
DHX57
DHX57 17
AGI_HUM1_OLIGO_A_23_P258462
A_23_P258462
NM_006017.1
PROM1
prominin 1
4
4p15.32
TCAAATGTGATGGCTAGATTCTAACATATTGCCATGTGTGGAGTGTGCTGAACACACACC
[36.1:4:15579772-15579711:-]
PROM1
PROM1 18
AGI_HUM1_OLIGO_A_24_P81965
A_24_P81965
NM_021033.5
RAP2A
RAP2A, member of RAS oncogene family
13
13q34
TTCTTTTGATGTTGCAACTTTTGGGTTCTTTTAAACTGTGATAGTGATGGTAACTGATGC
[36.1:13:96917444-96917503:+]
RAP2A
RAP2A 19
AGI_OLIGO_AL133645_1_971
AL133645_1_971
TGCCAAGCTCTCCAAGCTGGAGGCCACTCTGCAACGTGTGAGTACCAGGAGCTGATGAAA
[36.1:3:161769354-161769413:+]
KRT8P12
KRT8P12 20
AGI_HUM1_OLIGO_A_23_P8038
A_23_P8038
NM_014596.4|NM_170783.2
ZNRD1
zinc ribbon domain containing 1
6
6p21.3
TGGGTTTTTAGATGCCTTGTCCATCCTGTCTGGTTGCAATGTTTTGCTCCCAGAAGAGAA
[36.1:6_qbl_hap2:1279456-1279515:+]|[36.1:6_cox_hap1:1481136-1481195:+]|[36.1:6:30140508-30140567:+]
ZNRD1
ZNRD1
45220 9999 Kbytes .Supplementary data files not provided
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