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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 19, 2010 |
| Title |
NimbleGen Mouse 2.1M array [100512_MM8_CHARM_HX1] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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| |
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| Description |
Annotation based on UCSC mouse genome assembly Feb 2006 (mm8)
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| Submission date |
Jul 14, 2010 |
| Last update date |
Jul 19, 2010 |
| Contact name |
Akiko Doi |
| E-mail(s) |
adoi@jhmi.edu
|
| Phone |
410-614-3478
|
| Organization name |
Johns Hopkins University School of Medicine
|
| Department |
Medicine
|
| Street address |
855 N Wolfe St, Rangos 580
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
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| Samples (26)
|
GSM566372, GSM566373, GSM566374, GSM566375, GSM566376, GSM566377
GSM566378, GSM566379, GSM566380, GSM566381, GSM566382, GSM566383, GSM566384, GSM566385, GSM566386, GSM566387, GSM566388, GSM569896, GSM569897, GSM569898, GSM569899, GSM569900, GSM569901, GSM569902, GSM569903, GSM569904
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| Series (2) |
| GSE22851 |
DNA methylation data from mouse iPS cells, ES cells, and ntES cells |
| GSE23110 |
DNA methylation data from mouse hematopoietic progenitors |
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| Data table header descriptions |
| ID |
|
| PROBE_ID |
|
| SEQ_ID |
SEQ_ID in the .ndf file |
| SEQUENCE |
Sequence of the probe |
| RANGE_START |
Chromosomal start position of oligo |
| RANGE_END |
Chromosomal end position of oligo |
| Chromosome |
Chromosomal location |
| RANGE_GB |
|
| Data table |
| ID |
PROBE_ID |
SEQ_ID |
SEQUENCE |
RANGE_START |
RANGE_END |
Chromosome |
RANGE_GB |
| 11989_1_1 |
CHR09FS061169811 |
chr9:61166533-61173370 |
TTATCGGTCCTAAATCTTTTGAAGTGAAAACATTAAACTGACAAAGTGAT |
61169811 |
61169860 |
chr9 |
NC_000075.4 |
| 11989_23_1 |
CHR02FS130270895 |
chr2:130266613-130276457 |
GGGGCTGAAGTGCTCGCTGACTTGGTCGTTAAGGTCATTTAAGAGGACTG |
130270895 |
130270944 |
chr2 |
NC_000068.5 |
| 11989_25_1 |
CHR04FS150857346 |
chr4:150849391-150858626 |
TTGAAGAGTGCCAGGTCTTTGCTTCAGCCCCTCCACAGTGGCTGCCAGCC |
150857346 |
150857395 |
chr4 |
NC_000070.4 |
| 11989_27_1 |
CHR12FS077449822 |
chr12:77449327-77454038 |
CTGGTTGTTTGGTTTTCTCATCCATAAACTAGGGAGAACACCTCCATTCT |
77449822 |
77449871 |
chr12 |
NC_000078.4 |
| 11989_29_1 |
CHR02FS084529005 |
chr2:84526005-84529336 |
TGGGAATAATAACAGTATTCAACCTCCTAAAGTTGTTTTGAAGATTAGATGAGACATA |
84529005 |
84529062 |
chr2 |
NC_000068.5 |
| 11989_31_1 |
CHR13FS035667196 |
chr13:35665829-35667326 |
ATATGACTCAGAACTGCTGTTTTTACTTGCTACTCAAGTGTGGCTGTGTTAACATTACATCACA |
35667196 |
35667259 |
chr13 |
NC_000079.4 |
| 11989_33_1 |
CHR11FS058517144 |
chr11:58515846-58517897 |
TTCATAATGTGGGTGTGACAGTGCACACTTGTAATCCTAACACATGGGAGA |
58517144 |
58517194 |
chr11 |
NC_000077.4 |
| 11989_35_1 |
CHR03FS089481346 |
chr3:89476764-89482698 |
TAGACACAACCCGGGTCTTTCTGCGGCTGGATTATCATTCTTTAGCAGTT |
89481346 |
89481395 |
chr3 |
NC_000069.4 |
| 11989_37_1 |
CHR05FS066539035 |
chr5:66538259-66542897 |
GTGGACCCAGCTCCTTGCTCCTTGCTGCCTTACCCACTAGGGCTGCCTCA |
66539035 |
66539084 |
chr5 |
NC_000071.4 |
| 11989_39_1 |
CHR09FS078101240 |
chr9:78094985-78101481 |
GCAGCCACATGGCCAGGGTCCAGGGTCAGTTACTGTCCCACTGAGAATTA |
78101240 |
78101289 |
chr9 |
NC_000075.4 |
| 11989_41_1 |
CHR11FS020533826 |
chr11:20528911-20534457 |
CTCTCCACCCAGGTCTGTTCCTTACTTTATTTCAACAGGTAGGGACTCAC |
20533826 |
20533875 |
chr11 |
NC_000077.4 |
| 11989_43_1 |
CHR04FS154713458 |
chr4:154712147-154717793 |
CCGTGGAGCCGTGGTTCGAGGCGACCTCCCTGACCATGCCCGAGATTAGG |
154713458 |
154713507 |
chr4 |
NC_000070.4 |
| 11989_45_1 |
CHR17FS063187614 |
chr17:63182506-63187830 |
TAAAAATAAAATAGAATATGAATGGATCTCATAAATGTGTGTTGAATCAG |
63187614 |
63187663 |
chr17 |
NC_000083.4 |
| 11989_47_1 |
CHR04FS015809626 |
chr4:15807394-15810566 |
GTGCCAATTTCTGCTGCGAAGTCAGAGTAGCTGGGAACGGGGTGGGGGAG |
15809626 |
15809675 |
chr4 |
NC_000070.4 |
| 11989_49_1 |
CHR17FS034542508 |
chr17:34541983-34544834 |
TAGCCACCAGCTCCGGCATTGTCTTCTTCTCCAATCCAGCCCACCCTGAG |
34542508 |
34542557 |
chr17 |
NC_000083.4 |
| 11989_51_1 |
CHR02FS025155038 |
chr2:25153095-25156133 |
AGCGTTCGTGTCTCTTCCAGCGTCCAGAAGTTTCTGTGCTGCGTCTGGTT |
25155038 |
25155087 |
chr2 |
NC_000068.5 |
| 11989_53_1 |
CHR05FS030900157 |
chr5:30896858-30900924 |
AAGAAAAAAAAAGGGCAGGCCACAGATGTTAGAGCAGAGTGTGTGCAGAA |
30900157 |
30900206 |
chr5 |
NC_000071.4 |
| 11989_55_1 |
CHR15FS034781562 |
chr15:34779855-34784525 |
TCTCAAACAGAACTCCATTACTCCTCCCCATGCCAACAGGACCTGTGCAC |
34781562 |
34781611 |
chr15 |
NC_000081.4 |
| 11989_165_1 |
CHR11FS074981656 |
chr11:74978359-74990250 |
CTTGTCTGGGCTGAGTCCTAGCTCAGCAGTGAATTTAGCCAGCGGGTAGA |
74981656 |
74981705 |
chr11 |
NC_000077.4 |
| 11989_167_1 |
CHR02FS172242901 |
chr2:172236721-172247849 |
GCCTGGCCTCGCACCACAGCCGCTCTGCAAGTCTAATACCCCATATTTCA |
172242901 |
172242950 |
chr2 |
NC_000068.5 |
Total number of rows: 2157430
Table truncated, full table size 301632 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL10683_100512_MM8_CHARM_HX1.ndf.gz |
145.4 Mb |
(ftp)(http) |
NDF |
| GPL10683_100512_MM8_CHARM_HX1.pos.gz |
17.1 Mb |
(ftp)(http) |
POS |
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