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Platform GPL10961 Query DataSets for GPL10961
Status Public on Sep 30, 2010
Title NimbleGen mouse 385K Refseq and miRNA promoter tiling, 2 of 2-array set (2007-07-27_MM8_promoters_miRNA)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation in this record based on NCBI mouse build 36 (mm8).
native array description file: 2007-07-27_MM8_promoters_miRNA_2.ndf
native array description file: 2007-07-27_MM8_promoters_miRNA_2.pos
 
Submission date Sep 22, 2010
Last update date Sep 30, 2010
Contact name Yi Sun
E-mail(s) ysun@mednet.ucla.edu
Phone 310-825-9506
Organization name UCLA
Department Molecular and Medical Pharmacology
Street address 635, Charles E. Young Dr. South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Samples (4) GSM597223, GSM597225, GSM597227, GSM597229
Series (2)
GSE24286 Genome-wide Analysis Reveals Mecp2-dependent Regulation of MicroRNAs in a Mouse Model of Rett Syndrome (mm8 promoter arrays)
GSE24329 Genome-wide Analysis Reveals Mecp2-dependent Regulation of MicroRNAs in a Mouse Model of Rett Syndrome

Data table header descriptions
ID
CHROMOSOME
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE
SPOT_ID

Data table
ID CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE SPOT_ID
CHR01MIRFS020658696 chr1 NC_000067.4 20658696 20658740 ATGTAGGGACCTGGACCCTTAGTTCCTCATAGCACTAACAGTTAG
CHR01MIRFS020658920 chr1 NC_000067.4 20658920 20658970 ATTTTGATTTTATTCTTTCCTCTCCCTGAACTCCTCCCTTGTCCTCTCCAC
CHR01MIRFS020659140 chr1 NC_000067.4 20659140 20659186 ACACAAGTCAGTTTTGTGTTAGCCAACTGCTTTGAGCATGAACCTGC
CHR01MIRFS020659222 chr1 NC_000067.4 20659222 20659278 CAGAGAAAACTGATGTTCCCTTCCAGCAGGTATCAGTTGCAATGAATTTCTTGGTTA
CHR01MIRFS020659340 chr1 NC_000067.4 20659340 20659396 TAGACCTCATAGGACTGGTGTAAGCATAAAGATTCCAAACCAATGCTTTTGTAGCCT
CHR01MIRFS020659437 chr1 NC_000067.4 20659437 20659481 TCCCAGCTCTGAATCACCTGGGTGAGATGTTAGAAAGGAGAGAAA
CHR01MIRFS020659512 chr1 NC_000067.4 20659512 20659556 CTAAGCTAGGTGTCAGAGTGCCTAGAGGGAGAGAAGGTAGAATTT
CHR01MIRFS020659609 chr1 NC_000067.4 20659609 20659665 CATGAGTCAAACAACACTCAGAACTGGTCAGTGCTTTAAAAATAGCAAAACCTCCTG
CHR01MIRFS020659780 chr1 NC_000067.4 20659780 20659832 GACTGGTAAACTCTAGAATGGCCTGTTTCATGAACAAACGACCAAGATTACCA
CHR01MIRFS020659906 chr1 NC_000067.4 20659906 20659950 TGTGCTTCCACTGTTACAAACAGAAAGCTTGACCAGGCTCAGAGA
CHR01MIRFS020660011 chr1 NC_000067.4 20660011 20660055 GACATTCAACATGGCCCAGGTCTTTTCTCCTCTTTCAGTAAAGGG
CHR01MIRFS020660092 chr1 NC_000067.4 20660092 20660148 ACATGCCCTGTAGTAACTAAAGGGAATGTCTGAGCATCTTACTAAGTCACTCACAAA
CHR01MIRFS020660200 chr1 NC_000067.4 20660200 20660262 TTGTTAGATGCTGATGAAGACCCTTCCTCTCAGCTTCTTTACAGACATGTCAAAATGTTTTCA
CHR01MIRFS020660384 chr1 NC_000067.4 20660384 20660440 AAGTAGGTCATGCATAAAGCCCCACATGGTATGCATACCTAGTCACTGAATTAGTAA
CHR01MIRFS020660498 chr1 NC_000067.4 20660498 20660547 GCTCACAGCACTTTACACTTCCCAAAAGTCTCTCACTGGAGTTTCTTGTT
CHR01MIRFS020660595 chr1 NC_000067.4 20660595 20660639 TAATCAAGTCCCGGTCTTCACCCTCATACCCGTTGCATCCAATAA
CHR01MIRFS020660660 chr1 NC_000067.4 20660660 20660709 TGTTGGTCTGTAATCTGCTCTTCTCCCTGGCTCAAACCATTCCCAATTTT
CHR01MIRFS020660796 chr1 NC_000067.4 20660796 20660852 TTCTACTACACAAATGTTCAGCTCAGGAAAAAAAGACAAGACAAGACGAGGAGAGGA
CHR01MIRFS020661025 chr1 NC_000067.4 20661025 20661077 GGAAAGGAAAAACTACGGCTGTTGCTTATGATTTTGGCACCACTTTCACTGTT
CHR01MIRFS020661143 chr1 NC_000067.4 20661143 20661188 GGAGGCTTTTATGAATTAGTCAATTGTGGGATCGAGTTGGGTGGTG

Total number of rows: 386653

Table truncated, full table size 40549 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10961_2007-09-17_MM8_promoters_miRNA_2.ndf.gz 24.1 Mb (ftp)(http) NDF
GPL10961_2007-09-17_MM8_promoters_miRNA_2.pos.gz 2.9 Mb (ftp)(http) POS

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