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| Status |
Public on Nov 03, 2010 |
| Title |
[Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
#%chip_type=Cytogenetics_Array
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%dbsnp-date=2010-04-00
#%dbsnp-version=131
#%dgv-date=2010-03-00
#%dgv-version=9
#%hapmap-date=2008-01-08
#%hapmap-version=23
#%netaffx-annotation-date=2010-07-00
#%netaffx-annotation-netaffx-build=31
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| Web link |
http://www.affymetrix.com/browse/products.jsp?productId=prod30007
http://www.affymetrix.com/analysis/index.affx
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| Submission date |
Nov 03, 2010 |
| Last update date |
Mar 01, 2011 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
|
| Phone |
888-362-2447
|
| URL |
http://www.affymetrix.com/index.affx
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| Street address |
|
| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (105)
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GSM617112, GSM617113, GSM617114, GSM617115, GSM873375, GSM873376
GSM873377, GSM873378, GSM873379, GSM873380, GSM931256, GSM931257, GSM931258, GSM931259, GSM931260, GSM931261, GSM931262, GSM931263, GSM931264, GSM1062714, GSM1062715, GSM1062716, GSM1062717, GSM1062718, GSM1062719, GSM1062720, GSM1062721, GSM1062722, GSM1062723, GSM1062724, GSM1062725, GSM1062726, GSM1062727, GSM1121627, GSM1122691, GSM1195443, GSM1195444, GSM1195445, GSM1195446, GSM1486449, GSM1564107, GSM1564108, GSM1564109, GSM1564110, GSM1564111, GSM1564112, GSM1564113, GSM1564114, GSM1564115, GSM1564116, GSM1564117, GSM1564118, GSM1564829, GSM1564830, GSM1564831, GSM1564832, GSM1701248, GSM1701249, GSM1701250, GSM1701251, GSM1701252, GSM1701253, GSM1701254, GSM1701255, GSM1701256, GSM1701257, GSM1701258, GSM1701259, GSM1701260, GSM1701261, GSM1701262, GSM1701263, GSM1701264, GSM1701265, GSM1701266, GSM1701267, GSM1701268, GSM1701269, GSM1701270, GSM1701271, GSM1701272, GSM1701273, GSM1701274, GSM1701275, GSM1701276, GSM1701277, GSM1701278, GSM1701279, GSM1701280, GSM1701281, GSM1701282, GSM1701283, GSM1701284, GSM1701285, GSM3529689, GSM3529690, GSM3529691, GSM3529692, GSM4929543, GSM4929544, GSM4929545, GSM4929546, GSM4929547, GSM4929549, GSM4929550
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| Series (18)
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| GSE25116 |
Affymetrix SNP-array data for 2 ETV6/RUNX1-positive Acute Lymphoblastic Leukemia samples and corresponding normal samples |
| GSE25117 |
Illumina and Affymetrix SNP-array data for 2 ETV6/RUNX1-positive Acute Lymphoblastic Leukemia samples and corresponding normal samples |
| GSE35674 |
Affymetrix Cytogenetics array data for a study of D45-deficiency resulting from uniparental disomy: a novel cause of SCID |
| GSE37978 |
Cyto2.7M copy number analysis of eight diffuse large B-cell samples and one matched blood sample |
| GSE37979 |
Performance Comparison of the Affymetrix SNP6.0 and Cytogenetic 2.7M Whole-genome Microarrays in Complex Cancer Samples |
| GSE43454 |
Copy Number Variation in Neuroblastoma |
| GSE46005 |
Single case sample of a Non-Hodgkin lymphoma |
| GSE46060 |
10 Intellectual Disability samples for clinically relevant CNV detection |
| GSE49215 |
Genomic characterization of three acute lymphoblastic leukemia cases and one established cell line REH at the single cell level |
| GSE60733 |
Affymetrix SNP array data for NUP98 rearranged acute leukemias |
| GSE64083 |
MYC-negative BL frequent in posttransplant patients (cytogenetic) |
| GSE64086 |
MYC-negative BL frequent in posttransplant patients |
| GSE64121 |
Detection of copy number variation in patients with Pelizaeus-Merzbacher disease (PMD) - Affymetrix |
| GSE64122 |
Detection of copy number variation in patients with Pelizaeus-Merzbacher disease (PMD) |
| GSE69440 |
Posttransplant diffuse large B-cell lymphoma: new genetic findings |
| GSE124330 |
Copy number (SNP) analysis from leukemic patients with complex structural variants |
| GSE162000 |
Affymetrix SNP array data for acute leukemias with a 14q32/BCL11B rearrangement |
| GSE162283 |
14q32 recombinations deregulating BCL11B mark a distinct Mixed Phenotype Leukemia |
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| Data table header descriptions |
| ID |
Affymetrix Probe Set ID |
| dbSNP RS ID |
SNP identifier from dbSNP |
| Chromosome |
Chromosome (1-22, X, Y) |
| Physical Position |
1-based SNP chromosomal position |
| Strand |
Strand (+|-) |
| Cytoband |
The chromosome band seen on Giemsa-stained chromosomes. Value is the band number where the SNP probe set maps |
| Chromosome Start |
The start base position of the 5'-most probe in the probe set |
| Chromosome Stop |
The end base position of the 3'-most probe in the probe set |
| SPOT_ID |
|
| Data table |
| ID |
dbSNP RS ID |
Chromosome |
Physical Position |
Strand |
Cytoband |
Chromosome Start |
Chromosome Stop |
SPOT_ID |
| S-2LGEM |
rs60 |
7 |
11620162 |
+ |
p21.3 |
|
|
rs60 |
| S-2MML1 |
rs75 |
7 |
11613692 |
+ |
p21.3 |
|
|
rs75 |
| S-2MYS5 |
rs78 |
7 |
11611400 |
+ |
p21.3 |
|
|
rs78 |
| S-2N60K |
rs80 |
7 |
11608730 |
+ |
p21.3 |
|
|
rs80 |
| S-2FUIW |
rs106 |
7 |
24454033 |
+ |
p15.3 |
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|
rs106 |
| S-2GK06 |
rs116 |
7 |
24965298 |
+ |
p15.3 |
|
|
rs116 |
| S-2IZ58 |
rs193 |
7 |
27943809 |
+ |
p15.2 |
|
|
rs193 |
| S-2K901 |
rs362 |
13 |
32477206 |
+ |
q13.1 |
|
|
rs362 |
| S-2KEEO |
rs394 |
5 |
9603365 |
+ |
p15.31 |
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|
rs394 |
| S-2KEIV |
rs396 |
5 |
9615339 |
+ |
p15.31 |
|
|
rs396 |
| S-2KEKJ |
rs397 |
5 |
9614558 |
+ |
p15.31 |
|
|
rs397 |
| S-2KEZ5 |
rs405 |
7 |
91546327 |
+ |
q21.2 |
|
|
rs405 |
| S-2KIKU |
rs429 |
7 |
19106505 |
+ |
p21.1 |
|
|
rs429 |
| S-2KKI5 |
rs437 |
7 |
116296896 |
+ |
q31.2 |
|
|
rs437 |
| S-2KW7D |
rs476 |
7 |
125953786 |
+ |
q31.33 |
|
|
rs476 |
| S-2LBXM |
rs595 |
X |
140802923 |
+ |
q27.2 |
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|
rs595 |
| S-2LFIJ |
rs605 |
X |
138340441 |
+ |
q27.1 |
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|
rs605 |
| S-2LHRO |
rs627 |
X |
140533367 |
+ |
q27.2 |
|
|
rs627 |
| S-2LJYF |
rs645 |
X |
128035454 |
+ |
q25 |
|
|
rs645 |
| S-2LMMS |
rs651 |
X |
126481239 |
+ |
q25 |
|
|
rs651 |
Total number of rows: 2795708
Table truncated, full table size 159231 Kbytes.
| Supplementary data files not provided |
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