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Status
Public on Nov 27, 2010
Title
ZB/SBS-NTU Plasmodium falciparum 3D7 11.4K v1.1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Plasmodium falciparum Manufacturer
ZB lab/SBS-NTU
Manufacture protocol
Long oligonucleotides were selected using the program OligoRankPick, described in Guangan Hu, Manuel Llinás, Jingguang Li, Peter Rainer Preiser & Zbynek Bozdech: Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy. BMC Bioinformatics 2007, 8:350.
Support
glass
Coating
polysine
Web link
http://zblab.sbs.ntu.edu.sg/OligoRankPick/index.html Contributor(s)
Hu G , Bozdech Z , Llinás M , Li J , Preiser PR , Foth BJ , Mok S Citation(s)
17880708 Submission date
Nov 25, 2010
Last update date
Jul 05, 2014
Contact name
Sachel Mok
E-mail(s)
moks0007@ntu.edu.sg, sm4223@cumc.columbia.edu Organization name
Nanyang Technological University
Street address
60 Nanyang Drive
City
Singapore
ZIP/Postal code
637551
Country
Singapore
Samples (672)
GSM635264 , GSM635265 , GSM635266 , GSM635267 , GSM635268 , GSM635269
GSM635270 ,
GSM635271 ,
GSM635272 ,
GSM635273 ,
GSM635274 ,
GSM635275 ,
GSM635276 ,
GSM635277 ,
GSM635278 ,
GSM635279 ,
GSM635280 ,
GSM635281 ,
GSM635282 ,
GSM635283 ,
GSM635284 ,
GSM635285 ,
GSM635286 ,
GSM635287 ,
GSM635288 ,
GSM635289 ,
GSM635290 ,
GSM635291 ,
GSM635292 ,
GSM635293 ,
GSM635294 ,
GSM635295 ,
GSM635296 ,
GSM635297 ,
GSM635298 ,
GSM635299 ,
GSM635300 ,
GSM635301 ,
GSM635302 ,
GSM635303 ,
GSM635304 ,
GSM635305 ,
GSM635306 ,
GSM635307 ,
GSM635308 ,
GSM635309 ,
GSM635310 ,
GSM635311 ,
GSM635312 ,
GSM635313 ,
GSM635314 ,
GSM635315 ,
GSM635316 ,
GSM635317 ,
GSM635318 ,
GSM635319 ,
GSM635320 ,
GSM635321 ,
GSM635322 ,
GSM635323 ,
GSM635324 ,
GSM635325 ,
GSM635326 ,
GSM635327 ,
GSM635328 ,
GSM635329 ,
GSM635330 ,
GSM635331 ,
GSM635332 ,
GSM635333 ,
GSM635334 ,
GSM635335 ,
GSM635336 ,
GSM635337 ,
GSM635338 ,
GSM635339 ,
GSM635340 ,
GSM635341 ,
GSM635342 ,
GSM635343 ,
GSM635344 ,
GSM635345 ,
GSM635346 ,
GSM635347 ,
GSM635348 ,
GSM635349 ,
GSM635350 ,
GSM635351 ,
GSM635352 ,
GSM635353 ,
GSM635354 ,
GSM734499 ,
GSM734500 ,
GSM734501 ,
GSM734502 ,
GSM734503 ,
GSM734504 ,
GSM734505 ,
GSM734506 ,
GSM734507 ,
GSM734508 ,
GSM734509 ,
GSM734510 ,
GSM734511 ,
GSM734512 ,
GSM734513 ,
GSM734514 ,
GSM789451 ,
GSM789452 ,
GSM789453 ,
GSM789454 ,
GSM789455 ,
GSM789456 ,
GSM789457 ,
GSM789458 ,
GSM789459 ,
GSM789460 ,
GSM789461 ,
GSM789462 ,
GSM789463 ,
GSM789464 ,
GSM789465 ,
GSM789466 ,
GSM789467 ,
GSM789468 ,
GSM789469 ,
GSM789470 ,
GSM789471 ,
GSM789472 ,
GSM789473 ,
GSM789474 ,
GSM789475 ,
GSM789476 ,
GSM789477 ,
GSM789478 ,
GSM789479 ,
GSM789480 ,
GSM789481 ,
GSM789482 ,
GSM789483 ,
GSM789484 ,
GSM789485 ,
GSM789486 ,
GSM798004 ,
GSM798005 ,
GSM798006 ,
GSM798007 ,
GSM798008 ,
GSM798009 ,
GSM798010 ,
GSM798011 ,
GSM798012 ,
GSM798013 ,
GSM798014 ,
GSM798015 ,
GSM798016 ,
GSM798017 ,
GSM798018 ,
GSM798019 ,
GSM798020 ,
GSM798021 ,
GSM798022 ,
GSM798023 ,
GSM798024 ,
GSM798025 ,
GSM798026 ,
GSM798027 ,
GSM798028 ,
GSM798029 ,
GSM798030 ,
GSM798031 ,
GSM798032 ,
GSM798033 ,
GSM798034 ,
GSM798035 ,
GSM798036 ,
GSM798037 ,
GSM798038 ,
GSM798039 ,
GSM798040 ,
GSM798041 ,
GSM798042 ,
GSM798043 ,
GSM798044 ,
GSM798045 ,
GSM798046 ,
GSM798047 ,
GSM798048 ,
GSM798049 ,
GSM798050 ,
GSM853446 ,
GSM853447 ,
GSM853448 ,
GSM853449 ,
GSM853450 ,
GSM853451 ,
GSM958509 ,
GSM958510 ,
GSM958511 ,
GSM958512 ,
GSM958513 ,
GSM958514 ,
GSM969929 ,
GSM969930 ,
GSM969931 ,
GSM969932 ,
GSM969933 ,
GSM969934 ,
GSM969935 ,
GSM969936 ,
GSM969937 ,
GSM969938 ,
GSM1079359 ,
GSM1079360 ,
GSM1079361 ,
GSM1079362 ,
GSM1079363 ,
GSM1079364 ,
GSM1079365 ,
GSM1079366 ,
GSM1079367 ,
GSM1079368 ,
GSM1079369 ,
GSM1079370 ,
GSM1079371 ,
GSM1079372 ,
GSM1079373 ,
GSM1079374 ,
GSM1079375 ,
GSM1079376 ,
GSM1079377 ,
GSM1079378 ,
GSM1079379 ,
GSM1079380 ,
GSM1079381 ,
GSM1079382 ,
GSM1285978 ,
GSM1285979 ,
GSM1285980 ,
GSM1285981 ,
GSM1285982 ,
GSM1285983 ,
GSM1285984 ,
GSM1285985 ,
GSM1285986 ,
GSM1285987 ,
GSM1285988 ,
GSM1285989 ,
GSM1285990 ,
GSM1285991 ,
GSM1285992 ,
GSM1285993 ,
GSM1285994 ,
GSM1285995 ,
GSM1285996 ,
GSM1285997 ,
GSM1285998 ,
GSM1285999 ,
GSM1576877 ,
GSM1576878 ,
GSM1576879 ,
GSM1576880 ,
GSM1576881 ,
GSM1576882 ,
GSM1576883 ,
GSM1576884 ,
GSM1576885 ,
GSM1576886 ,
GSM1576887 ,
GSM1576888 ,
GSM1576889 ,
GSM1576890 ,
GSM1576891 ,
GSM1576892 ,
GSM1576893 ,
GSM1576894 ,
GSM1576895 ,
GSM1576896 ,
GSM1576897 ,
GSM1576898 ,
GSM1576899 ,
GSM1576900 ,
GSM1576901 ,
GSM1576902 ,
GSM1576903 ,
GSM1576904 ,
GSM1576905 ,
GSM1576906 ,
GSM1576907 ,
GSM1576908 ,
GSM1576909 ,
GSM1576910 ,
GSM1576911 ,
GSM1576912 ,
GSM1576931 ,
GSM1576932 ,
GSM1576933 ,
GSM1576934 ,
GSM1576935 ,
GSM1576936 ,
GSM1576937 ,
GSM1576938 ,
GSM1865471 ,
GSM1865472 ,
GSM1865473 ,
GSM1865474 ,
GSM1865475 ,
GSM1865476 ,
GSM1865477 ,
GSM1865478 ,
GSM1865479 ,
GSM1865480 ,
GSM1865481 ,
GSM1865482 ,
GSM1865483 ,
GSM1865484 ,
GSM1865485 ,
GSM1865486 ,
GSM1865487 ,
GSM1865488 ,
GSM1865489 ,
GSM1865490 ,
GSM1865491 ,
GSM1865492 ,
GSM1865493 ,
GSM1865494 ,
GSM1865495 ,
GSM1865496 ,
GSM1865497 ,
GSM1865498 ,
GSM1865499 ,
GSM1865500 ,
GSM1865501 ,
GSM1865502 ,
GSM1865503 ,
GSM1865504 ,
GSM1865505 ,
GSM1865506 ,
GSM1865507 ,
GSM1865508 ,
GSM1865509 ,
GSM1865510 ,
GSM1865511 ,
GSM1865512 ,
GSM1865513 ,
GSM1865514 ,
GSM1865515 ,
GSM1865516 ,
GSM1865517 ,
GSM1865518 ,
GSM1865519 ,
GSM1865520 ,
GSM1865521 ,
GSM1865522 ,
GSM1865523 ,
GSM1865524 ,
GSM1948951 ,
GSM1948952 ,
GSM1948953 ,
GSM1948954 ,
GSM1948955 ,
GSM1948956 ,
GSM1948957 ,
GSM1948958 ,
GSM1948959 ,
GSM1948960 ,
GSM1948961 ,
GSM1948962 ,
GSM2226913 ,
GSM2226914 ,
GSM2226915 ,
GSM2226916 ,
GSM2226917 ,
GSM2226918 ,
GSM2226919 ,
GSM2226920 ,
GSM2226921 ,
GSM2226922 ,
GSM2226923 ,
GSM2226924 ,
GSM2226925 ,
GSM2226926 ,
GSM2226927 ,
GSM2226928 ,
GSM2226929 ,
GSM2226930 ,
GSM2226931 ,
GSM2226932 ,
GSM2226933 ,
GSM2226934 ,
GSM2226935 ,
GSM2226936 ,
GSM2226937 ,
GSM2226938 ,
GSM2226939 ,
GSM2226940 ,
GSM2226941 ,
GSM2226942 ,
GSM2226943 ,
GSM2226944 ,
GSM2226945 ,
GSM2226946 ,
GSM2226947 ,
GSM2226948 ,
GSM2226949 ,
GSM2226950 ,
GSM2226951 ,
GSM2226952 ,
GSM2226953 ,
GSM2226954 ,
GSM2226955 ,
GSM2226956 ,
GSM2226957 ,
GSM2226958 ,
GSM2226959 ,
GSM2226960 ,
GSM2226961 ,
GSM2226962 ,
GSM2226963 ,
GSM2226964 ,
GSM2226965 ,
GSM2226966 ,
GSM2226967 ,
GSM2226968 ,
GSM2226969 ,
GSM2226970 ,
GSM2226971 ,
GSM2226972 ,
GSM2226973 ,
GSM2226974 ,
GSM2226975 ,
GSM2226976 ,
GSM2226977 ,
GSM2226978 ,
GSM2226979 ,
GSM2226980 ,
GSM2226981 ,
GSM2226982 ,
GSM2226983 ,
GSM2226984 ,
GSM2226985 ,
GSM2226986 ,
GSM2226987 ,
GSM2226988 ,
GSM2226989 ,
GSM2226990 ,
GSM2226991 ,
GSM2226992 ,
GSM2226993 ,
GSM2226994 ,
GSM2226995 ,
GSM2226996 ,
GSM2226997 ,
GSM2226998 ,
GSM2226999 ,
GSM2227000 ,
GSM2227001 ,
GSM2227002 ,
GSM2227003 ,
GSM2227004 ,
GSM2227005 ,
GSM2227006 ,
GSM2227007 ,
GSM2227008 ,
GSM3058809 ,
GSM3058810 ,
GSM3058811 ,
GSM3058812 ,
GSM3058813 ,
GSM3058814 ,
GSM3058815 ,
GSM3058816 ,
GSM3058817 ,
GSM3058818 ,
GSM3058819 ,
GSM3058820 ,
GSM3058821 ,
GSM3058822 ,
GSM3058823 ,
GSM3058824 ,
GSM3058825 ,
GSM3058826 ,
GSM3058827 ,
GSM3058828 ,
GSM3058829 ,
GSM3058830 ,
GSM3058831 ,
GSM3058832 ,
GSM3058833 ,
GSM3058834 ,
GSM3058835 ,
GSM3058836 ,
GSM3058837 ,
GSM3058838 ,
GSM3058839 ,
GSM3058840 ,
GSM3058841 ,
GSM3058842 ,
GSM3058843 ,
GSM3058844 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (26)
GSE25642 Comparative gene expression profiling of P. falciparum malaria parasites exposed to three different histone deacetylase inhibitors
GSE25878 Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription (expression)
GSE25883 Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription
GSE31829 Mutually Exclusive Transcription of Subtelomeric Gene Families in Plasmodium falciparum is Restricted to var Genes
GSE32211 Whole transcriptome analysis identifies a subset of Group A var genes that encode the malaria parasite ligands for binding to human brain endothelial cells
GSE39238 Dynamics of epigenetic regulation of gene expression during Plasmodium falciparum life cycle
GSE39485 Identification of a New Chemical Class of Antimalarials, ACT-213615
GSE44127 Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum [expression]
GSE44129 Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum.
GSE53176 Heterochromatin protein 1 secures survival and transmission of malaria parasites
GSE64688 Whole genome expression profiling across the asexual life cycle in PfBDP1 knockdown malaria parasites
GSE64690 Whole genome expression profiling across the life cycle of PfBDP1 overexpressing P. falciparum malaria parasites
GSE64691 A Novel Plasmodium Falciparum Bromodomain Protein Regulates Invasion Gene Expression
GSE72578 DNA damage regulation and its role in drug-related phenotypes in the malaria parasites. [RNA]
GSE72580 DNA damage regulation and its role in drug-related phenotypes in the malaria parasites.
GSE75295 A crucial role of the zinc finger protein PfZnFP-G in sexual differentiation of the malaria parasites, Plasmodium falciparum
GSE84082 Role of H4K8ac in P. falciparum life cycle [gene expression]
GSE84084 Role of H4K8ac in P. falciparum life cycle
GSE112149 In vitro transcriptomic profiling of P. falciparum under 4 hr artemisinin challenge (900nM), from 10 HPI
GSE112150 Steady-state in vitro transcriptomic profiling of P. falciparum across parasite's intraerythrocytic life cycle
GSE112151 Steady-state in vitro transcriptomic profiling of P. falciparum from 10-20 HPI
GSE142275 Transcriptional profilling of Plasmodium falciparum parasites with disrupted PfNot1.1 (PF3D7_1103800) or PfNot1.2 (PF3D7_1417200)
GSE142276 Differential recruitment of Ser2/5 phosphorylated RPB1, a component of the elongating RNAPII, in Plasmoidium falciparum parasite with disrupted PfNot1.1 (PF3D7_1103800).
GSE142527 The mRNA decay analysis of Plasmodium falciparum parasites with disrupted PfNot1.1 (PF3D7_1103800) at 24 hour post-invasion.
GSE149393 Transcriptional alterations of P. falciparum 3D7-A heat shock-adapted vs control parasites.
GSE149394 Transcriptomic analysis of heat shock resistance in Plasmodium falciparum
Relations Alternative to
GPL18893
Data table header descriptions ID SEQUENCE Oligonucleotide sequence
ORF GeneID in PlasmoDB (at http://www.plasmodb.org)
Annotation Gene annotation
Chromosome Chromosome Number
Position Oligonucleotide location on chromosome
SPOT_ID spot id
Data table ID SEQUENCE ORF Annotation Chromosome Position SPOT_ID ac11rRNA18s_0
AGGCGCGTAAATTACCCAATTCTAAAAAAGAGAGGTAGTGACAAGAAATAACAATACAATATCGAAAAAT
c11rRNA18s
c11rRNA18s
ac11rRNA18s_1
GCCCGTCGCTCCTACCGATTGAAAGATATGATGAATTGTTTGGATATGAATTAAAATAATGAAATTTTAT
c11rRNA18s
c11rRNA18s
ac11rRNA28s_0
ATAGTACCTGAAATCGTTAAGGTGGAACGGATTAAGAAAGGAAAATGTAAGAAGATAGTAAATATTACTC
c11rRNA28s
c11rRNA28s
ac11rRNA28s_1
AAAAGGATTGGCTCTGAGGACATTAGAAAAGAGAAGAAAAAAAAGGGGGTTGAAAATAAAATTACAGATT
c11rRNA28s
c11rRNA28s
ac11rRNA28s_2
CTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGAATTTTATTATATTTTTTATATAT
c11rRNA28s
c11rRNA28s
ac11rRNA5.8s_0
AAATGCAATTACTGTGAATCATCAGAATGCTGAATGTAAACTATACCATATTTACCCTTATGGGCAAATT
c11rRNA5.8s
c11rRNA5.8s
ac11rRNAITS1_0
CACCAACAATATTGAATACTCAAACTTTTTACATAATTATTTGTTTTATATATATATATAATATCTTTAT
c11rRNAITS1
c11rRNAITS1
ac11rRNAITS2_0
ACAATACTTTGTGCTTCTCTGGTTTTTTTTTTGTGATATGTTATATTTTAATCATATATATATATTATCA
c11rRNAITS2
c11rRNAITS2
ac13rRNA18s_0
ATAGTACCTGAAATCGTTAAGGTGGAACGGATTAAGAAAGGAAAATGTAAGAAGATAGTAAATATTACTC
c13rRNA18s
c13rRNA18s
ac13rRNA18s_1
AAAAGGATTGGCTCTGAGGACATTAGAAAAGAGAAGAAAAAAAAGGGGGTTGAAAATAAAATTACAGATT
c13rRNA18s
c13rRNA18s
ac13rRNA18s_2
ATATATATATATACATATAGTATTGTGACAGTAATCCAACTTGGTACGAGAGGATTAGTTGGTTCAGACA
c13rRNA18s
c13rRNA18s
ac13rRNA28s_0
AGGCGCGTAAATTACCCAATTCTAAAAAAGAGAGGTAGTGACAAGAAATAACAATACAATATCGAAAAAT
c13rRNA28s
c13rRNA28s
ac13rRNA28s_1
GCCCGTCGCTCCTACCGATTGAAAGATATGATGAATTGTTTGGATATGAATTAAAATAATGAAATTTTAT
c13rRNA28s
c13rRNA28s
ac13rRNA5.8s_0
AAATGCAATTACTGTGAATCATCAGAATGCTGAATGTAAACTATACCATATTTACCCTTATGGGCAAATT
c13rRNA5.8s
c13rRNA5.8s
ac13rRNAITS1_0
ACAATACTTTTGTGCTTCTCTGGTTTTTTTTTTGTGATATGTTATATTTTAATCATATATATATATTATC
c13rRNAITS1
c13rRNAITS1
ac13rRNAITS2_0
CACCAACAATATTGAATACTCAAAATTTTGCATAATTATTTGTTTTATATATATATATATAATATCTTTA
c13rRNAITS2
c13rRNAITS2
ac14rRNA.1-5s_0
TCGTTCATACTACAGTGGCCACACCAGATCCCATCAGAACTCTGAAGTTAAGCACTGTAAGGCTTGGCTA
c14rRNA.1-5s
c14rRNA.1-5s
ac14rRNA.2-5s_0
TCGTTCATACTACAGTGGCCACACCAGATCCCATCAGAACTCTGAAGTTAAGCACTGTAAGGCTTGGCTA
c14rRNA.2-5s
c14rRNA.2-5s
ac14rRNA.3-5s_0
TCGTTCATACTACAGTGGCCACACCAGATCCCATCAGAACTCTGAAGTTAAGCACTGTAAGGCTTGGCTA
c14rRNA.3-5s
c14rRNA.3-5s
ac1rRNA18s_0
CATGCAAGTGAAAGTACATATGTAAGTAATATATTGAAACTGCGAACGGCTCATTAAAACAGTTATAATC
c1rRNA18s
c1rRNA18s
11372 1427 Kbytes .Supplementary data files not provided
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