GEO help: Mouse over screen elements for information.
Status
Public on Dec 07, 2010
Title
ZB/SBS-NTU Plasmodium falciparum 3D7 IGR+ORF 16.8K v1.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Plasmodium falciparum Manufacturer
ZB lab/SBS-NTU
Manufacture protocol
Long oligonucleotides were selected using the program OligoRankPick, described in Guangan Hu, Manuel Llinás, Jingguang Li, Peter Rainer Preiser & Zbynek Bozdech: Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy. BMC Bioinformatics 2007, 8:350.
Support
glass
Coating
polysine
Web link
http://zblab.sbs.ntu.edu.sg/OligoRankPick/index.html Contributor(s)
Hu G , Bozdech Z , Llinás M , Li J , Preiser PR , Mok S , Gupta AP , Foth BJ Citation(s)
17880708 Submission date
Nov 29, 2010
Last update date
Jul 11, 2012
Contact name
Sachel Mok
E-mail(s)
moks0007@ntu.edu.sg, sm4223@cumc.columbia.edu Organization name
Nanyang Technological University
Street address
60 Nanyang Drive
City
Singapore
ZIP/Postal code
637551
Country
Singapore
Samples (370)
GSM635355 , GSM635356 , GSM635357 , GSM635358 , GSM635359 , GSM635360
GSM635361 ,
GSM635362 ,
GSM635363 ,
GSM635364 ,
GSM718291 ,
GSM718292 ,
GSM718293 ,
GSM718294 ,
GSM718295 ,
GSM718296 ,
GSM718297 ,
GSM718298 ,
GSM718299 ,
GSM718300 ,
GSM718301 ,
GSM718302 ,
GSM958515 ,
GSM958516 ,
GSM958517 ,
GSM958518 ,
GSM958519 ,
GSM958520 ,
GSM958521 ,
GSM958522 ,
GSM958523 ,
GSM958524 ,
GSM958525 ,
GSM958526 ,
GSM958527 ,
GSM958528 ,
GSM958529 ,
GSM958530 ,
GSM958531 ,
GSM958532 ,
GSM958533 ,
GSM958534 ,
GSM958535 ,
GSM958536 ,
GSM958537 ,
GSM958538 ,
GSM958539 ,
GSM958540 ,
GSM958541 ,
GSM958542 ,
GSM958543 ,
GSM958544 ,
GSM958545 ,
GSM958546 ,
GSM958547 ,
GSM958548 ,
GSM958549 ,
GSM958550 ,
GSM958551 ,
GSM958553 ,
GSM958554 ,
GSM958555 ,
GSM958556 ,
GSM958557 ,
GSM958558 ,
GSM958559 ,
GSM958560 ,
GSM958561 ,
GSM958562 ,
GSM958563 ,
GSM958564 ,
GSM958565 ,
GSM958566 ,
GSM958567 ,
GSM958568 ,
GSM958569 ,
GSM958570 ,
GSM958571 ,
GSM958572 ,
GSM958573 ,
GSM958574 ,
GSM958575 ,
GSM958576 ,
GSM958577 ,
GSM958578 ,
GSM958579 ,
GSM958580 ,
GSM958581 ,
GSM958582 ,
GSM958583 ,
GSM958584 ,
GSM958585 ,
GSM958586 ,
GSM958587 ,
GSM958588 ,
GSM958589 ,
GSM958590 ,
GSM958591 ,
GSM958592 ,
GSM958593 ,
GSM958594 ,
GSM958595 ,
GSM958596 ,
GSM958597 ,
GSM958598 ,
GSM958599 ,
GSM958600 ,
GSM958601 ,
GSM958602 ,
GSM958603 ,
GSM958604 ,
GSM958605 ,
GSM958606 ,
GSM958607 ,
GSM958608 ,
GSM958609 ,
GSM958610 ,
GSM958611 ,
GSM958612 ,
GSM958613 ,
GSM958614 ,
GSM958615 ,
GSM958616 ,
GSM958617 ,
GSM958618 ,
GSM958619 ,
GSM958620 ,
GSM958621 ,
GSM958622 ,
GSM958623 ,
GSM958624 ,
GSM958625 ,
GSM958626 ,
GSM958627 ,
GSM958628 ,
GSM958629 ,
GSM958630 ,
GSM958631 ,
GSM958632 ,
GSM958633 ,
GSM958634 ,
GSM958635 ,
GSM958636 ,
GSM958637 ,
GSM958638 ,
GSM958639 ,
GSM958640 ,
GSM958641 ,
GSM958642 ,
GSM958643 ,
GSM958644 ,
GSM958645 ,
GSM958646 ,
GSM958647 ,
GSM958648 ,
GSM958649 ,
GSM958650 ,
GSM958651 ,
GSM958652 ,
GSM958653 ,
GSM958654 ,
GSM958655 ,
GSM958656 ,
GSM958657 ,
GSM958658 ,
GSM958659 ,
GSM958660 ,
GSM958661 ,
GSM958662 ,
GSM958663 ,
GSM958664 ,
GSM958665 ,
GSM958666 ,
GSM958667 ,
GSM958668 ,
GSM958669 ,
GSM958670 ,
GSM958671 ,
GSM958672 ,
GSM958673 ,
GSM958674 ,
GSM958675 ,
GSM958676 ,
GSM958677 ,
GSM958678 ,
GSM958679 ,
GSM958680 ,
GSM958681 ,
GSM958682 ,
GSM958683 ,
GSM958684 ,
GSM958685 ,
GSM958686 ,
GSM958687 ,
GSM958688 ,
GSM958689 ,
GSM958690 ,
GSM958691 ,
GSM958692 ,
GSM958693 ,
GSM958694 ,
GSM958695 ,
GSM958696 ,
GSM958697 ,
GSM958698 ,
GSM958699 ,
GSM958700 ,
GSM958701 ,
GSM958702 ,
GSM958703 ,
GSM958704 ,
GSM958705 ,
GSM958706 ,
GSM958707 ,
GSM958708 ,
GSM958709 ,
GSM958710 ,
GSM958711 ,
GSM958712 ,
GSM958713 ,
GSM958714 ,
GSM958715 ,
GSM958716 ,
GSM1079383 ,
GSM1079384 ,
GSM1387956 ,
GSM1387957 ,
GSM1387958 ,
GSM1387959 ,
GSM1387960 ,
GSM1387961 ,
GSM1387962 ,
GSM1387963 ,
GSM1387964 ,
GSM1387965 ,
GSM1387966 ,
GSM1387967 ,
GSM1387968 ,
GSM1387969 ,
GSM1387970 ,
GSM1387971 ,
GSM1387972 ,
GSM1387973 ,
GSM1387974 ,
GSM1387975 ,
GSM1387976 ,
GSM1387977 ,
GSM1387978 ,
GSM1387979 ,
GSM1387980 ,
GSM1387981 ,
GSM1387982 ,
GSM1387983 ,
GSM1387984 ,
GSM1387985 ,
GSM1387986 ,
GSM1387987 ,
GSM1387988 ,
GSM1387989 ,
GSM1387990 ,
GSM1387991 ,
GSM1387992 ,
GSM1387993 ,
GSM1387994 ,
GSM1387995 ,
GSM1387996 ,
GSM1387997 ,
GSM1387998 ,
GSM1387999 ,
GSM1388000 ,
GSM1388001 ,
GSM1388002 ,
GSM1388003 ,
GSM1388004 ,
GSM1388005 ,
GSM1388006 ,
GSM1388007 ,
GSM1388008 ,
GSM1388009 ,
GSM1388010 ,
GSM1388011 ,
GSM1388012 ,
GSM1388013 ,
GSM1388014 ,
GSM1477440 ,
GSM1477441 ,
GSM1477442 ,
GSM1477443 ,
GSM1477444 ,
GSM1477445 ,
GSM1477446 ,
GSM1477447 ,
GSM1477448 ,
GSM1477449 ,
GSM1477450 ,
GSM1477451 ,
GSM1865525 ,
GSM1865526 ,
GSM1865527 ,
GSM1865528 ,
GSM1865529 ,
GSM1865530 ,
GSM1865531 ,
GSM1865532 ,
GSM1865533 ,
GSM1865534 ,
GSM1865535 ,
GSM1865536 ,
GSM1865537 ,
GSM1865538 ,
GSM1865539 ,
GSM1865540 ,
GSM1865541 ,
GSM1948963 ,
GSM1948964 ,
GSM1948965 ,
GSM1948966 ,
GSM1948967 ,
GSM1948968 ,
GSM1948969 ,
GSM1948970 ,
GSM1948971 ,
GSM1948972 ,
GSM1948973 ,
GSM1948974 ,
GSM1948975 ,
GSM1948976 ,
GSM1948977 ,
GSM1948978 ,
GSM1948979 ,
GSM1948980 ,
GSM2227009 ,
GSM2227010 ,
GSM2227011 ,
GSM2227012 ,
GSM2227013 ,
GSM2227014 ,
GSM2227015 ,
GSM2227016 ,
GSM2227017 ,
GSM2227018 ,
GSM2227019 ,
GSM2227020 ,
GSM2227021 ,
GSM2227022 ,
GSM2227023 ,
GSM2227024 ,
GSM2227025 ,
GSM2227026 ,
GSM2227027 ,
GSM2227028 ,
GSM2227029 ,
GSM2227030 ,
GSM2227031 ,
GSM2227032 ,
GSM2227033 ,
GSM2227034 ,
GSM2227035 ,
GSM2227036 ,
GSM2227037 ,
GSM2227038 ,
GSM2227039 ,
GSM2227040 ,
GSM2227041 ,
GSM2227042 ,
GSM2227043 ,
GSM2227044 ,
GSM2227045 ,
GSM2227046 ,
GSM2227047 Series (12)
GSE25879 Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription (CGH)
GSE25883 Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription
GSE28990 Whole transcriptome analysis of rosetting Plasmodium falciparum parasites
GSE39238 Dynamics of epigenetic regulation of gene expression during Plasmodium falciparum life cycle
GSE44128 Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum [CGH]
GSE44129 Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum.
GSE57748 Genome-wide RNA polymerase II recruitment study during the intraerythrocytic life cycle of Plasmodium falciparum.
GSE72579 DNA damage regulation and its role in drug-related phenotypes in the malaria parasites. [genomic DNA]
GSE72580 DNA damage regulation and its role in drug-related phenotypes in the malaria parasites.
GSE75295 A crucial role of the zinc finger protein PfZnFP-G in sexual differentiation of the malaria parasites, Plasmodium falciparum
GSE84083 Role of H4K8ac in P. falciparum life cycle [ChIP]
GSE84084 Role of H4K8ac in P. falciparum life cycle
Data table header descriptions ID SEQUENCE Oligonucleotide sequence
ORF GeneID in PlasmoDB (at http://www.plasmodb.org)
Annotation Gene annotation
Chromosome Chromosome Number
Position Oligonucleotide location on chromosome
SPOT_ID spot identifier
Data table ID SEQUENCE ORF Annotation Chromosome Position SPOT_ID ac11rRNA18s_0
AGGCGCGTAAATTACCCAATTCTAAAAAAGAGAGGTAGTGACAAGAAATAACAATACAATATCGAAAAAT
c11rRNA18s
c11rRNA18s
ac11rRNA18s_1
GCCCGTCGCTCCTACCGATTGAAAGATATGATGAATTGTTTGGATATGAATTAAAATAATGAAATTTTAT
c11rRNA18s
c11rRNA18s
ac11rRNA28s_0
ATAGTACCTGAAATCGTTAAGGTGGAACGGATTAAGAAAGGAAAATGTAAGAAGATAGTAAATATTACTC
c11rRNA28s
c11rRNA28s
ac11rRNA28s_1
AAAAGGATTGGCTCTGAGGACATTAGAAAAGAGAAGAAAAAAAAGGGGGTTGAAAATAAAATTACAGATT
c11rRNA28s
c11rRNA28s
ac11rRNA28s_2
CTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGAATTTTATTATATTTTTTATATAT
c11rRNA28s
c11rRNA28s
ac11rRNA5.8s_0
AAATGCAATTACTGTGAATCATCAGAATGCTGAATGTAAACTATACCATATTTACCCTTATGGGCAAATT
c11rRNA5.8s
c11rRNA5.8s
ac11rRNAITS1_0
CACCAACAATATTGAATACTCAAACTTTTTACATAATTATTTGTTTTATATATATATATAATATCTTTAT
c11rRNAITS1
c11rRNAITS1
ac11rRNAITS2_0
ACAATACTTTGTGCTTCTCTGGTTTTTTTTTTGTGATATGTTATATTTTAATCATATATATATATTATCA
c11rRNAITS2
c11rRNAITS2
ac13rRNA18s_0
ATAGTACCTGAAATCGTTAAGGTGGAACGGATTAAGAAAGGAAAATGTAAGAAGATAGTAAATATTACTC
c13rRNA18s
c13rRNA18s
ac13rRNA18s_1
AAAAGGATTGGCTCTGAGGACATTAGAAAAGAGAAGAAAAAAAAGGGGGTTGAAAATAAAATTACAGATT
c13rRNA18s
c13rRNA18s
ac13rRNA18s_2
ATATATATATATACATATAGTATTGTGACAGTAATCCAACTTGGTACGAGAGGATTAGTTGGTTCAGACA
c13rRNA18s
c13rRNA18s
ac13rRNA28s_0
AGGCGCGTAAATTACCCAATTCTAAAAAAGAGAGGTAGTGACAAGAAATAACAATACAATATCGAAAAAT
c13rRNA28s
c13rRNA28s
ac13rRNA28s_1
GCCCGTCGCTCCTACCGATTGAAAGATATGATGAATTGTTTGGATATGAATTAAAATAATGAAATTTTAT
c13rRNA28s
c13rRNA28s
ac13rRNA5.8s_0
AAATGCAATTACTGTGAATCATCAGAATGCTGAATGTAAACTATACCATATTTACCCTTATGGGCAAATT
c13rRNA5.8s
c13rRNA5.8s
ac13rRNAITS1_0
ACAATACTTTTGTGCTTCTCTGGTTTTTTTTTTGTGATATGTTATATTTTAATCATATATATATATTATC
c13rRNAITS1
c13rRNAITS1
ac13rRNAITS2_0
CACCAACAATATTGAATACTCAAAATTTTGCATAATTATTTGTTTTATATATATATATATAATATCTTTA
c13rRNAITS2
c13rRNAITS2
ac14rRNA.1-5s_0
TCGTTCATACTACAGTGGCCACACCAGATCCCATCAGAACTCTGAAGTTAAGCACTGTAAGGCTTGGCTA
c14rRNA.1-5s
c14rRNA.1-5s
ac14rRNA.2-5s_0
TCGTTCATACTACAGTGGCCACACCAGATCCCATCAGAACTCTGAAGTTAAGCACTGTAAGGCTTGGCTA
c14rRNA.2-5s
c14rRNA.2-5s
ac14rRNA.3-5s_0
TCGTTCATACTACAGTGGCCACACCAGATCCCATCAGAACTCTGAAGTTAAGCACTGTAAGGCTTGGCTA
c14rRNA.3-5s
c14rRNA.3-5s
ac1rRNA18s_0
CATGCAAGTGAAAGTACATATGTAAGTAATATATTGAAACTGCGAACGGCTCATTAAAACAGTTATAATC
c1rRNA18s
c1rRNA18s
16774 2088 Kbytes .Supplementary data files not provided
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