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Status
Public on Feb 01, 2011
Title
NimbleGen Daphnia pulex Expression Array 12x135k (All Probes) [080925_Daphnia_UI_JC_expr]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Daphnia pulex Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
This is a custom design whole Daphnia genome expression array in 12-plex format manufactured by Roche Nimblegen. Genes based on Daphnia pulex annotated draft genome assembly GenBank accession number: ACJG00000000.
Submission date
Dec 03, 2010
Last update date
Dec 14, 2016
Contact name
Jacqueline Lopez
E-mail(s)
jacqueline.ann.lopez@gmail.com Phone
574-631-1902
Organization name
University of Notre Dame
Department
Biology
Lab
Pfrender Laboratory
Street address
019 Galvin Life Science Center
City
Notre Dame
State/province
Indiana
ZIP/Postal code
46556
Country
USA
Samples (577)
GSM634746 , GSM634747 , GSM634748 , GSM634749 , GSM634767 , GSM634768
GSM634769 ,
GSM634770 ,
GSM634771 ,
GSM634772 ,
GSM634773 ,
GSM634774 ,
GSM634775 ,
GSM634776 ,
GSM634777 ,
GSM634778 ,
GSM634779 ,
GSM634780 ,
GSM634781 ,
GSM634782 ,
GSM634783 ,
GSM634784 ,
GSM634785 ,
GSM634786 ,
GSM634787 ,
GSM634788 ,
GSM634789 ,
GSM634790 ,
GSM634791 ,
GSM634792 ,
GSM634793 ,
GSM634794 ,
GSM634795 ,
GSM634796 ,
GSM634797 ,
GSM634798 ,
GSM634799 ,
GSM634800 ,
GSM634801 ,
GSM634802 ,
GSM634803 ,
GSM634804 ,
GSM634805 ,
GSM634806 ,
GSM634807 ,
GSM634808 ,
GSM634809 ,
GSM634810 ,
GSM634811 ,
GSM634812 ,
GSM634813 ,
GSM634814 ,
GSM634864 ,
GSM634865 ,
GSM634866 ,
GSM634867 ,
GSM634868 ,
GSM634869 ,
GSM634870 ,
GSM634871 ,
GSM634872 ,
GSM634873 ,
GSM634874 ,
GSM634875 ,
GSM634876 ,
GSM634877 ,
GSM897786 ,
GSM897787 ,
GSM897788 ,
GSM897789 ,
GSM1173138 ,
GSM1173139 ,
GSM1173140 ,
GSM1173141 ,
GSM1173142 ,
GSM1173143 ,
GSM1173144 ,
GSM1173145 ,
GSM1173146 ,
GSM1173147 ,
GSM1173148 ,
GSM1173149 ,
GSM1173150 ,
GSM1173151 ,
GSM1173152 ,
GSM1173153 ,
GSM1173154 ,
GSM1173155 ,
GSM1173156 ,
GSM1173157 ,
GSM1173158 ,
GSM1173159 ,
GSM1173160 ,
GSM1173161 ,
GSM1173162 ,
GSM1173163 ,
GSM1173164 ,
GSM1173165 ,
GSM1173166 ,
GSM1173167 ,
GSM1173168 ,
GSM1173169 ,
GSM1173170 ,
GSM1173171 ,
GSM1173172 ,
GSM1173173 ,
GSM1173174 ,
GSM1173175 ,
GSM1173176 ,
GSM1173177 ,
GSM1173178 ,
GSM1173179 ,
GSM1173180 ,
GSM1173181 ,
GSM1173182 ,
GSM1173183 ,
GSM1173184 ,
GSM1173185 ,
GSM1173186 ,
GSM1173187 ,
GSM1173188 ,
GSM1173189 ,
GSM1173190 ,
GSM1173191 ,
GSM1173192 ,
GSM1173193 ,
GSM1173194 ,
GSM1173195 ,
GSM1173196 ,
GSM1173197 ,
GSM1299044 ,
GSM1299045 ,
GSM1299046 ,
GSM1299047 ,
GSM1299048 ,
GSM1299049 ,
GSM1299050 ,
GSM1299051 ,
GSM1299052 ,
GSM1299053 ,
GSM1299054 ,
GSM1299055 ,
GSM1299056 ,
GSM1299057 ,
GSM1299058 ,
GSM1299059 ,
GSM1299060 ,
GSM1299061 ,
GSM1299062 ,
GSM1299063 ,
GSM1299064 ,
GSM1299065 ,
GSM1299066 ,
GSM1299067 ,
GSM1299068 ,
GSM1299069 ,
GSM1299070 ,
GSM1299071 ,
GSM1299072 ,
GSM1299073 ,
GSM1299074 ,
GSM1299075 ,
GSM1299076 ,
GSM1299077 ,
GSM1299078 ,
GSM1299079 ,
GSM1533080 ,
GSM1533081 ,
GSM1533082 ,
GSM1533083 ,
GSM1533084 ,
GSM1533085 ,
GSM1533086 ,
GSM1533087 ,
GSM1533088 ,
GSM1533089 ,
GSM1533090 ,
GSM1533091 ,
GSM1533092 ,
GSM1533093 ,
GSM1533094 ,
GSM1533095 ,
GSM1533096 ,
GSM1533097 ,
GSM1533098 ,
GSM1533099 ,
GSM1533100 ,
GSM1533101 ,
GSM1533102 ,
GSM1533103 ,
GSM1533104 ,
GSM1533105 ,
GSM1533106 ,
GSM1533107 ,
GSM1533108 ,
GSM1533109 ,
GSM1533110 ,
GSM1533111 ,
GSM1533112 ,
GSM1533113 ,
GSM1533114 ,
GSM1533115 ,
GSM1533116 ,
GSM1533117 ,
GSM1533118 ,
GSM1533119 ,
GSM1544987 ,
GSM1544988 ,
GSM1544989 ,
GSM1544990 ,
GSM1544991 ,
GSM1544992 ,
GSM1544993 ,
GSM1544994 ,
GSM1544995 ,
GSM1544996 ,
GSM1544997 ,
GSM1544998 ,
GSM2419879 ,
GSM2419880 ,
GSM2419881 ,
GSM2419882 ,
GSM2419883 ,
GSM2419884 ,
GSM2419885 ,
GSM2419886 ,
GSM2419887 ,
GSM2419888 ,
GSM2419889 ,
GSM2419890 ,
GSM2419956 ,
GSM2419957 ,
GSM2419958 ,
GSM2419959 ,
GSM2419960 ,
GSM2419961 ,
GSM2419962 ,
GSM2419963 ,
GSM2419964 ,
GSM2419965 ,
GSM2419966 ,
GSM2419967 ,
GSM2730587 ,
GSM2730588 ,
GSM2730589 ,
GSM2730590 ,
GSM2730591 ,
GSM2730592 ,
GSM2730593 ,
GSM2730594 ,
GSM2730595 ,
GSM2730596 ,
GSM2730597 ,
GSM2730598 ,
GSM2730599 ,
GSM2730600 ,
GSM2730601 ,
GSM2730602 ,
GSM2730603 ,
GSM2730604 ,
GSM2730605 ,
GSM2730606 ,
GSM2730607 ,
GSM2730608 ,
GSM2730609 ,
GSM2730610 ,
GSM2730611 ,
GSM2730612 ,
GSM2730613 ,
GSM2730614 ,
GSM2730615 ,
GSM2730616 ,
GSM2730617 ,
GSM2730618 ,
GSM2730619 ,
GSM2730620 ,
GSM2730621 ,
GSM2730622 ,
GSM2730623 ,
GSM2730624 ,
GSM2730625 ,
GSM2730626 ,
GSM2730627 ,
GSM2730628 ,
GSM2730629 ,
GSM2730630 ,
GSM2730631 ,
GSM2730632 ,
GSM2730633 ,
GSM2730634 ,
GSM2730635 ,
GSM2730636 ,
GSM2730637 ,
GSM2730638 ,
GSM2730639 ,
GSM2730640 ,
GSM2730641 ,
GSM2730642 ,
GSM2730643 ,
GSM2730644 ,
GSM2730645 ,
GSM2730646 ,
GSM2730647 ,
GSM2730648 ,
GSM2730649 ,
GSM2730650 ,
GSM2730651 ,
GSM2730652 ,
GSM2730653 ,
GSM2730654 ,
GSM2730655 ,
GSM2730656 ,
GSM2730657 ,
GSM2730658 ,
GSM2730659 ,
GSM2730660 ,
GSM2730661 ,
GSM2730662 ,
GSM2730663 ,
GSM2730664 ,
GSM2730665 ,
GSM2730666 ,
GSM2730667 ,
GSM2730668 ,
GSM2730669 ,
GSM2730670 ,
GSM2730671 ,
GSM2730672 ,
GSM2730673 ,
GSM2730674 ,
GSM2730675 ,
GSM2730676 ,
GSM2730677 ,
GSM2730678 ,
GSM2730679 ,
GSM2730680 ,
GSM2730681 ,
GSM2730682 ,
GSM2730683 ,
GSM2730684 ,
GSM2730685 ,
GSM2730686 ,
GSM2730687 ,
GSM2730688 ,
GSM2730689 ,
GSM2730690 ,
GSM2730691 ,
GSM2730692 ,
GSM2730693 ,
GSM2730694 ,
GSM2730695 ,
GSM2730696 ,
GSM2730697 ,
GSM2730698 ,
GSM2730699 ,
GSM2730700 ,
GSM2730701 ,
GSM2730702 ,
GSM2730703 ,
GSM2730704 ,
GSM2730705 ,
GSM2730706 ,
GSM2730707 ,
GSM2730708 ,
GSM2730709 ,
GSM2730710 ,
GSM2730711 ,
GSM2730712 ,
GSM2730713 ,
GSM2730714 ,
GSM2730715 ,
GSM2730716 ,
GSM2730717 ,
GSM2730718 ,
GSM2730719 ,
GSM2730720 ,
GSM2730721 ,
GSM2730722 ,
GSM2730723 ,
GSM2730724 ,
GSM2730725 ,
GSM2730726 ,
GSM2730727 ,
GSM2730728 ,
GSM2730729 ,
GSM2730730 ,
GSM2730731 ,
GSM2730732 ,
GSM2730733 ,
GSM2730734 ,
GSM2730735 ,
GSM2730736 ,
GSM2730737 ,
GSM2730738 ,
GSM2730739 ,
GSM2730740 ,
GSM2730741 ,
GSM2730742 ,
GSM2730743 ,
GSM2730744 ,
GSM2730745 ,
GSM2730746 ,
GSM2730747 ,
GSM2730748 ,
GSM2730749 ,
GSM2730750 ,
GSM2730751 ,
GSM2730752 ,
GSM2730753 ,
GSM2730754 ,
GSM2730755 ,
GSM2730756 ,
GSM2730757 ,
GSM2730758 ,
GSM2730759 ,
GSM2730760 ,
GSM2730761 ,
GSM2730762 ,
GSM2730763 ,
GSM2730764 ,
GSM2730765 ,
GSM2730766 ,
GSM2730767 ,
GSM2730768 ,
GSM2730769 ,
GSM2730770 ,
GSM2730771 ,
GSM2730772 ,
GSM2730773 ,
GSM2730774 ,
GSM2730775 ,
GSM2730776 ,
GSM2730777 ,
GSM2730778 ,
GSM2730779 ,
GSM2730780 ,
GSM2730781 ,
GSM2730782 ,
GSM2730783 ,
GSM2730784 ,
GSM2730785 ,
GSM2730786 ,
GSM2730787 ,
GSM2730788 ,
GSM2730789 ,
GSM2730790 ,
GSM2730791 ,
GSM2730792 ,
GSM2730793 ,
GSM2730794 ,
GSM2730795 ,
GSM2730796 ,
GSM2730797 ,
GSM2730798 ,
GSM2730799 ,
GSM2730800 ,
GSM2730801 ,
GSM2730802 ,
GSM2730803 ,
GSM2730804 ,
GSM2730805 ,
GSM2730806 ,
GSM2730807 ,
GSM2730808 ,
GSM2730809 ,
GSM2730810 ,
GSM2730811 ,
GSM2730812 ,
GSM2730813 ,
GSM2730814 ,
GSM2730815 ,
GSM2730816 ,
GSM2730817 ,
GSM2730818 ,
GSM2730819 ,
GSM2730820 ,
GSM2730821 ,
GSM2730822 ,
GSM2730823 ,
GSM2730824 ,
GSM2730825 ,
GSM2730826 ,
GSM2730827 ,
GSM2730828 ,
GSM2730829 ,
GSM2730830 ,
GSM2730831 ,
GSM2730832 ,
GSM2730833 ,
GSM2730834 ,
GSM2730835 ,
GSM2730836 ,
GSM2730837 ,
GSM2730838 ,
GSM2730839 ,
GSM2730840 ,
GSM2730841 ,
GSM2730842 ,
GSM2730843 ,
GSM2730844 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (16)
GSE25823 The Ecoresponsive Genome of Daphnia pulex: Empirical annotation of the Daphnia pulex genome
GSE25841 Evolutionary Diversification of Duplicated Genes; Experiment A
GSE25843 Evolutionary Diversification of Duplicated Genes; Experiments B-I, M-P
GSE25845 Evolutionary Diversification of Duplicated Genes; Experiments B-I
GSE25850 Evolutionary Diversification of Duplicated Genes; Experiment J
GSE25851 Evolutionary Diversification of Duplicated Genes; Experiment L, K
GSE36635 Effects of microcystis on Daphnia pulex
GSE48232 Identifying genes and pathways that respond differently to dietary C:P between old (~700-yr-old) and young (~10-yr-old) resurrected Daphnia pulicaria genotypes that differ in C and P physiology
GSE48233 Genetic and physiological mechanisms underlying genotype by dietary stoichiometry interactions in Daphnia
GSE53692 Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia
GSE62763 Conserved transcriptional responses to cyanobacterial stressors are mediated by alternate regulation of paralogous genes in Daphnia
GSE63275 Expression analysis of kairomone responsive genes in Daphnia pulex
GSE91025 Phenotypic plasticity of temperature induced Daphnia gene expression; experiment 1
GSE91030 Phenotypic plasticity of temperature induced Daphnia gene expression; experiment 2
GSE91031 Phenotypic plasticity of temperature induced Daphnia gene expression
GSE102226 Gene co-expression networks drive and predict reproductive effects in Daphnia in response to environmental disturbances
Relations Alternative to
GPL20021
Data table header descriptions ID Probe ID
SEQ_ID Custom sequence ID
PROBE_DESIGN_ID NimbleGen design reference
SEQUENCE Probe sequence
RANGE_START Range start
LENGTH Probe length
RANGE_END Range end
Data table ID SEQ_ID PROBE_DESIGN_ID SEQUENCE RANGE_START LENGTH RANGE_END 1000060_1_sc_30_1000060_1000180P00001
1000060_1_sc_30_1000060_1000180
8295_0056_0526
CGGTGACACAACCACATTCTCTTCCAGTCCAGCAGACGTCCAGTCCGGTGCGTTGACACT
1
60
60
100008_1_sc_67_100008_100137P00004
100008_1_sc_67_100008_100137
8295_0237_0309
TCGTAGAGTACCATTACTATATTATCTTGAGATTTCAGTCAAATGTTTACAATTTAGTGA
4
60
63
100009_3_1399871_1400680_1_SC13_1399882_1400677P00
100009_3_1399871_1400680_1_SC13_1399882_1400677
8295_0087_0597
CACCACCACCATCACCACGGCGGAGGTCCCGGCCTGAGCAAAATGCACGGCATCGAGAAA
724
60
783
100009_4_1403128_1403367_1_SC13_1403155_1403360P00
100009_4_1403128_1403367_1_SC13_1403155_1403360
8295_0189_0525
CGTCGGCAGGATCGGCTTCGCACACGGACAGCGGCAGCGAGCAGGACAGCGTCAACGGCA
91
60
150
100009_5_1403624_1403706_1_SC13_1403624_1403706P00
100009_5_1403624_1403706_1_SC13_1403624_1403706
8295_0246_0224
TTAAACAACTTGACGTCCCTGCACTCTCCTCCTAGCTGCCCTGTTATATCAATATTCGAC
12
60
71
100010_1_sc_76_100010_100385P00154
100010_1_sc_76_100010_100385
8295_0171_0075
TCAATTGTCTCTGATGACATTTACAAAAGGCTGGAAGAAGTATTTAAACTTGACTGTCGA
154
60
213
1000131_1_sc_15_1000131_1000301P00033
1000131_1_sc_15_1000131_1000301
8295_0063_0093
TGAATTGTAAAAGATGCACCATCATATTCTACTTGTACTCTTATATCCAATGTCCAAAAA
33
60
92
1000210_1_sc_8_1000216_1000403P00001
1000210_1_sc_8_1000216_1000403
8295_0181_0319
GTTCGTGAACCTGATCAATCCAACTTCTCGATCCCTCATATGGAATTTTCTGATTTGGGC
1
60
60
1000228_1_sc_5_1000228_1000303P00005
1000228_1_sc_5_1000228_1000303
8295_0014_0606
GCAAAATACACCAGGAATTTGATTCACTCGTCGAATAAAATTGAGCCGCTTAATGATAGC
5
60
64
1000235_1_sc_12_1000235_1000385P00001
1000235_1_sc_12_1000235_1000385
8295_0437_0407
TCAATTGTGCTTTCGAATACCGCAATATACGAGTTCTTACTGTCAATAGTCGCCTGAATC
1
60
60
1000302_1_sc_1_1000302_1002651P00649
1000302_1_sc_1_1000302_1002651
8295_0184_0400
TGTCTAGCTAGCTCTTGATAACCGACACGGCCAGACGATCGGTTGCTTAGTTTCGTTGCG
649
60
708
1000302_2_sc_1_1000302_1002651P00020
1000302_2_sc_1_1000302_1002651
8295_0385_0289
TTCCACATTTTTATCCAAAAGATTATGTGATAAAGACAGACTCTGTGAGTATATATATCT
20
60
79
1000335_1_sc_24_1000335_1000630P00035
1000335_1_sc_24_1000335_1000630
8295_0335_0583
AAAAAGTTTTATGCCCTCATACGCAAGAGGTTTGACAGTGATCACATACGAGCCAGAAGA
35
60
94
1000336_1_sc_4_1000336_1001676P00018
1000336_1_sc_4_1000336_1001676
8295_0236_0346
TTGAAATCGCGTGAAATTAACATGGAGAAAATGGCGGTCATAGCTTTTTGCCTGATGTTG
18
60
77
1000336_2_sc_4_1000336_1001676P00002
1000336_2_sc_4_1000336_1001676
8295_0079_0373
TGAAAAAATAATCACCATGAGCCAGTATATCGTAAAATAGATTGTTTATGTTGCCTAATG
2
60
61
1000336_4_sc_4_1000336_1001676P00001
1000336_4_sc_4_1000336_1001676
8295_0072_0608
GTATAAAGTCGGTTGATGGAGTGGAAGATATAAGCGCGTTCGCGAGTCGTGCTGCACGAG
1
60
60
100034_1_sc_211_100034_100104P00001
100034_1_sc_211_100034_100104
8295_0298_0240
TGTGATTGATCGTCCTCAGCGAGAAGTTAAAAGAACAACAATGGCTTCAGCACCACCCCC
1
60
60
1000361_1_sc_15_1000361_1000506P00001
1000361_1_sc_15_1000361_1000506
8295_0444_0032
ACTTTATATAACACACTACTGGTGATTGCCATCACAAGGCCAGCAGATGTAGCCATCACC
1
60
60
100036_2_1504384_1505256_1_SC13_1504408_1505253P00
100036_2_1504384_1505256_1_SC13_1504408_1505253
8295_0385_0501
GCAACGGAATAACTCGACGACGCAGCCGGCGGCGCCACCTGCTGCAACGGATCACCAAAC
458
60
517
100036_3_1505325_1505953_1_SC13_1505355_1505953P00
100036_3_1505325_1505953_1_SC13_1505355_1505953
8295_0437_0311
GACAGGATTGGGTGCCTCCGGCTGCCCCAACTCCAGCCCCAATGGTCAAGCAGGCCGACA
327
60
386
134558 21187 Kbytes .Supplementary file Size Download File type/resource GPL11278_080925_Daphnia_UI_JC_expr.ndf.gz
8.5 Mb
(ftp) (http) NDF
GPL11278_080925_Daphnia_UI_JC_expr.txt.gz
6.2 Mb
(ftp) (http) TXT
GPL11278_080925_Daphnia_UI_JC_expr_HX12.ncd.gz
327 b
(ftp) (http) NCD
GPL11278_README_daphnia_12plex.sample.gff.txt
1.3 Kb
(ftp) (http) TXT
GPL11278_daphnia_12plex.sample.gff.gz
4.0 Mb
(ftp) (http) GFF
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