NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL11646 Query DataSets for GPL11646
Status Public on Jan 24, 2011
Title CIAT Brachiaria 8k cDNA array
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Brachiaria
Manufacturer International Center for Tropical Agriculture - CIAT, Plamira Valle del Cauca, Colombia
Manufacture protocol Clones were derived from non-susbtractive and substractive expression libraries, employing apomictc and sexual cDNA as tester and driver samples, and vice versa. The clones were amplified by PCR. 15 μl PCR product were mixed with 15 μl spotting buffer (betaine 3M, SSC 3X) using the robot Te-Shake (Tecan Group Ltda., Männedorf, Switzerland). The mix were arrayed over poly-L-lysine covered glass slides (Erie Scientific Company) using the spotting robot SPBIO (MiraiBio Inc, Alameda, CA) at a density of 8064 spots per slide. Each PCR product were spotted once in the slide. DNA was fixed onto the slide as described (Schena, 1999). Each slide was heated at 95ºC for ten seconds and was irradiated inmediately with UV at 410mJoules. The slides were incubated at 70ºC for two hours and were stored in Darkness at room temperature until hybridization.
 
Description ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED.
 
Submission date Jan 24, 2011
Last update date Jan 24, 2011
Contact name Eduardo Andres Gorron Gomez
E-mail(s) eduardo.gorron@kaust.edu.sa
Organization name King Abdullah University of Science and Technology
Street address KAUST, Thuwal, Saudi Arabia
City Thuwal
ZIP/Postal code 23955-6900
Country Saudi Arabia
 
Samples (7) GSM660455, GSM660456, GSM660457, GSM660458, GSM660459, GSM660460 
Series (1)
GSE26837 Transcriptome comparision in ovaries between sexual and apomictic plants of Brachiaria using cDNA microarrays

Data table header descriptions
ID
Grid Row
Grid Column
Spot Row
Spot Column
Organism
SEQUENCE CLONE SEQUENCE
SPOT_ID

Data table
ID Grid Row Grid Column Spot Row Spot Column Organism SEQUENCE SPOT_ID
p1-DSC_Apo_plA_A1 1 4 1 13 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A10 4 4 1 12 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A11 5 4 1 12 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A12 6 4 1 12 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A13 1 4 1 11 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A14 2 4 1 11 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A15 3 4 1 11 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A16 4 4 1 11 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A17 5 4 1 11 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A18 6 4 1 11 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A19 1 4 1 10 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A2 2 4 1 13 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A20 2 4 1 10 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A21 3 4 1 10 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A22 4 4 1 10 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A23 5 4 1 10 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A24 6 4 1 10 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A3 3 4 1 13 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A4 4 4 1 13 Brachiaria unsequenced clone
p1-DSC_Apo_plA_A5 5 4 1 13 Brachiaria unsequenced clone

Total number of rows: 8064

Table truncated, full table size 515 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap