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Status
Public on Aug 04, 2011
Title
Potato 10k cDNA array version 4 (CLONE_ID version)
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Solanum tuberosum Manufacturer
The Institute for Genomic Research
Manufacture protocol
Spotted PCR amplified cDNA array on glass.
Description
Spotted PCR amplified cDNA array on glass.
Web link
http://www.tigr.org/tdb/potato Submission date
Aug 03, 2011
Last update date
Aug 04, 2011
Contact name
Ratnesh Singh
E-mail(s)
ratnesh@hawaii.edu Phone
808-621-1279
Fax
808-621-1399
Organization name
Hawaii Agriculture Research Center
Street address
94-340 Kunia Rd
City
Waipahu
State/province
HI
ZIP/Postal code
96797
Country
USA
Samples (16)
GSM773050 , GSM773051 , GSM773052 , GSM773053 , GSM773054 , GSM773055
Series (4)
GSE31179 Shoot tip tissue: Tall Mokka vs Typica.
GSE34110 Gene expression study after 3 days of cold exposure in a Solanum tuberosum cultivar called Desirée
GSE34116 Gene expression study after 3 days of salt exposure in a Solanum tuberosum cultivar called Desirée
GSE34118 Gene expression study after 3 days of cold or salt exposure in a Solanum tuberosum cultivar called Desirée
Relations Alternative to
GPL3838
Data table header descriptions ID CLONE_ID: The name of original clone used for PCR amplification.
NAME Descriptive gene name, from Potato Gene Index Build 10.0
VALIDATION 0: spot not validated and not recommended for use; 1:validated spot
GB_LIST Genbank accession number(s) for the clone. ,
TA The TIGR Plant Transcript Assembly identifier for this clone.
TC The TIGR Potato Gene Index build indentifier.
TC_LIST The mapped TC numbers in previous potato Gene Index build
SPOT_ID identifier for spots without GenBank Accession Number
Data table ID NAME VALIDATION GB_LIST TA TC TC_LIST SPOT_ID STMBB01
1
Clone STMBB01 ()
STMBB02
1
Clone STMBB02 ()
STMBB03
1
Clone STMBB03 ()
STMBB04
1
Clone STMBB04 ()
STMBB05
1
Clone STMBB05 ()
STMBB06
1
AW905942 TA264_4113
AW905942
STMBB07
1
AW906255 TA1105_4113
STMBB08
1
AW906638 AW906638
STMBB09
1
BE339748 TA5098_4113
BE339748
STMBB10
1
BE340139 TA1044_4113
BE340139
STMBB11
1
BE340568 TA748_4113
BE340568
STMBB12
1
Clone STMBB12 ()
STMBB13
1
BE340568 BE340568
STMBB14
Do not use. Not validated.
0
TA688_4113
BE341179
Clone STMBB14 (Do not use. Not validated.)
STMBB15
1
BE341180 TA1781_4113
BE341180
STMBB16
1
BE341199 TA281_4113
BE341199
STMBB17
Do not use. Not validated.
0
Clone STMBB17 (Do not use. Not validated.)
STMBB18
1
AI776888 TA96_4081
AI776888
STMBB19
1
BE341180 TA983_4081
BE341180
STMBB20
1
AW036582 TA2507_4081
AW036582
15264 2078 Kbytes .Supplementary data files not provided
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