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Status
Public on Jan 16, 2013
Title
[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [MMBGX-Ensembl64]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Affymetrix
Manufacture protocol
See manufacturer's web site
Catalog number
901085
Description
This platform contains certain probeset groupings used for analysis with the MMBGX software platform (PMID 19854940)http://www.bgx.org.uk/software/mmbgx.html For data processing, the MMBGX software suite uses raw data CEL files directly as input.
Submission date
Nov 28, 2012
Last update date
Nov 28, 2012
Contact name
Nevan Krogan
E-mail(s)
nevan.krogan@ucsf.edu
Phone
415-476-2980
Fax
415-514-9736
Organization name
University of California, San Francisco
Department
Cellular & Molecular Pharmacology
Lab
Krogan
Street address
1700 4th Street
City
San Francisco
ZIP/Postal code
94158
Country
USA
Samples (12)
GSM1045351 , GSM1045352 , GSM1045353 , GSM1045354 , GSM1045355 , GSM1045356
Series (2)
GSE42574
CBFb Stabilizes HIV Vif to Counteract APOBEC3 at the Expense of RUNX1 Target Gene Expression [gene expression]
GSE42576
CBFb Stabilizes HIV Vif to Counteract APOBEC3 at the Expense of RUNX1 Target Gene Expression
Relations
Alternative to
GPL6244 (Alternative CDF [official])
Data table header descriptions
ID
Probes
Probes assigned to the indicated Ensembl gene ID
SPOT_ID
Ensembl Gene ID
Data table
ID
Probes
SPOT_ID
ENSG00000000003
32123,76520,96549,176991,194645,218359,240138,292329,325624,341638,389349,419212,438564,441220,496140,537249,548224,596642,619056,649942,676001,680502,698176,722387,724947,727535,733730,742203
ENSG00000000003
ENSG00000000005
59793,65572,66078,130767,240045,241450,259893,279142,298804,306551,349159,354211,359740,368918,370582,400700,438811,477604,499746,523089,536033,572862,581330,616298,666692,668199,669539,698485,735349,735920
ENSG00000000005
ENSG00000000419
26311,138544,154396,154579,161367,212241,212627,218369,344049,351029,403146,439081,444294,444972,452290,568219,586681,587159,587183,607822,616066,621411,631295,639037,697392,721042,739768
ENSG00000000419
ENSG00000000457
43068,79169,90590,94842,98514,109266,121143,127912,131854,186793,211039,234811,240288,254291,317240,332848,351240,352173,359628,367491,386696,388893,396826,420467,433169,443541,459104,480058,490391,505665,548529,562605,572889,609415,637602,723709,735407,740731,740734
ENSG00000000457
ENSG00000000460
21594,53004,79399,144804,153875,165399,177797,207058,228856,255538,301973,317439,341529,345011,351830,385417,388968,427139,428596,443898,454158,456004,459786,505315,513448,522937,526470,541196,549884,576310,610144,613729,634845,652889,658102,694338,704819,707528,726657
ENSG00000000460
ENSG00000000938
23752,24299,44914,77031,111756,170226,175814,221827,236257,238012,244296,271197,276677,307378,321650,347724,400671,421015,436089,442850,455142,466073,494463,503811,570778,614620,621602,624427,626184,685356,715705
ENSG00000000938
ENSG00000000971
6726,15367,60241,65914,66256,68213,72885,98574,142905,148265,148609,155992,159337,160519,177682,192794,201152,212740,248971,256674,267486,309568,315929,317944,360620,362459,362461,371262,375819,399655,399990,402862,407757,441448,443964,518198,542980,554980,572861,586504,587184,594085,597398,620494,626406,640590,660029,662127,663053,667024,683816,683824,692419,703750,704886,708932,719688,720801,729348,733554,737321,737850
ENSG00000000971
ENSG00000001036
50974,84326,101682,204349,224023,228460,233737,296205,328613,354313,438335,442647,464258,476996,536764,562113,590765,641791,672437,714416,732463,736644,741910
ENSG00000001036
ENSG00000001084
4517,30467,57329,90183,104940,143905,316208,376642,377014,378303,389839,402825,452600,463733,490829,532802,541666,575819,601336,614179,678896,681839,693852,725276
ENSG00000001084
ENSG00000001167
10036,42893,118682,124663,146281,190084,231806,248001,275695,302833,336648,352257,360099,390054,444480,448700,472884,517335,549124,572600,585971,589543,647048,664787,672226,686126,714172,735399
ENSG00000001167
ENSG00000001460
31725,43627,48674,71085,91573,93164,109740,119640,138227,140258,206315,225448,243254,253688,289890,290596,312257,312398,341483,458799,528086,561600,566832,592388,595324,622668,651794,657676,705948,727196
ENSG00000001460
ENSG00000001461
21609,93930,159992,177731,179651,211665,229212,244730,252168,266359,280586,324176,337268,373742,384337,416608,441557,449139,477039,481669,559091,560106,567200,610002,625084,649695,659358
ENSG00000001461
ENSG00000001497
4546,27324,40925,68255,111855,117111,155553,169382,183637,231987,232153,247122,299096,312225,348669,348735,372252,382258,417728,455248,457651,458359,468962,473757,484673,488644,492234,500941,531835,575980,607552,610599,644871,653853,660545,667809,673207,689817,696909,739115
ENSG00000001497
ENSG00000001561
50459,66858,81590,93923,135610,136807,138852,148976,156824,203569,232442,235194,247418,248004,256835,269795,275335,277642,321353,352895,357540,412663,421139,433089,433827,456810,521771,538275,558947,567885,588958,666449,676445,711589,738545
ENSG00000001561
ENSG00000001617
9024,13270,25503,48928,56068,60896,78638,81047,85713,91837,93619,94947,103344,121002,122060,134828,163576,178934,179235,200530,211513,235266,236744,251285,266453,315036,346199,362803,370253,373812,392907,432954,433248,446397,465512,468445,473956,476935,500216,522954,641105,659519,662614,700979,705043,713827
ENSG00000001617
ENSG00000001626
10198,15246,15457,40999,47605,69187,69508,97084,107391,130789,142520,144049,146200,160995,167141,169291,180880,203180,211652,255775,271935,285486,346310,346679,365235,374794,403269,403844,408802,453036,455161,474180,516245,526155,577126,618540,648348,661370,713728,725585,734521,740507
ENSG00000001626
ENSG00000001629
1513,9396,19974,29109,46712,50748,62318,68583,85524,108882,129656,162882,163264,165144,190546,256902,262628,272834,291662,298916,310444,311525,311638,317938,321893,323377,323697,408349,414654,426959,442206,448703,450508,477830,479409,496305,502084,504453,563037,577856,586486,622581,685478,699207,700604,704169,716858,733297
ENSG00000001629
ENSG00000001630
10580,67335,121238,123909,124629,145008,149204,218649,219865,295662,305928,334843,338760,388752,393738,454720,467803,469925,482011,506017,522383,527205,547486,553281,583364,586317,608359,646344,672232,678191,678449,680145,701880
ENSG00000001630
ENSG00000001631
30825,51388,69167,105766,123823,146800,168552,246574,323699,352788,357402,369235,407523,412442,438478,438501,449632,453697,463701,472266,487735,526375,537808,542552,555834,567014,620377,623835,639669,684846,701129,706030,713570,732687,741636
ENSG00000001631
ENSG00000002016
15688,56870,62846,75217,83579,97887,137786,156466,170739,188994,310192,332783,361011,396669,451215,480485,537862,610424,674159,717181,728241
ENSG00000002016
Total number of rows: 28875 Table truncated, full table size 7391 Kbytes .
Supplementary data files not provided