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Platform GPL17580 Query DataSets for GPL17580
Status Public on Mar 27, 2014
Title Agilent-019492 Project-0160-002
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Escherichia coli K-12
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description K12 composite design with RNA genes

Arrays of this design have barcodes that begin with 16019492 or 2519492.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Aug 15, 2013
Last update date Mar 27, 2014
Contact name Heather J Quinn
E-mail(s) quinnh@tcd.ie
Organization name Trinity College Dublin
Department Microbiology
Street address College green
City Dublin
ZIP/Postal code 2
Country Ireland
 
Samples (8) GSM1209634, GSM1209635, GSM1209636, GSM1209637, GSM1209638, GSM1209639 
Series (1)
GSE49914 ChIP-on-chip of OmpR binding in Salmonella enterica serovar Typhimurium strain SL1344 and E.scherichia coli strain CSH50 at pH 7 and pH 4.5 including analysis of OmpR binding in SL1344 in the absence and presence of novobiocin (25 μg/ml)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 266 170 DarkCorner pos
2 266 168 DarkCorner pos
3 266 166 DarkCorner pos
4 266 164 DarkCorner pos
5 266 162 DarkCorner pos
6 266 160 DarkCorner pos
7 266 158 DarkCorner pos
8 266 156 DarkCorner pos
9 266 154 DarkCorner pos
10 266 152 DarkCorner pos
11 266 150 DarkCorner pos
12 266 148 CGH_U00096_218268_218327_s FALSE U00096 proS|ref|U00096 unmapped 1
13 266 146 CGH_U00096_2239049_2239108_s FALSE U00096 galS|ref|U00096 unmapped 1
14 266 144 NA ignore
15 266 142 CGH_U00096_3448934_3448993_a FALSE U00096 rplB|ref|U00096 unmapped -1
16 266 140 CGH_U00096_4464560_4464619_a FALSE U00096 treR|ref|U00096 unmapped -1
17 266 138 CGH_U00096_3332298_3332357_s FALSE U00096 ispB|ref|U00096 unmapped 1
18 266 136 CGH_U00096_780068_780127_s FALSE U00096 lysW|ref|U00096 unmapped 1
19 266 134 CGH_U00096_3033191_3033250_a FALSE U00096 lysS|ref|U00096 unmapped -1
20 266 132 CGH_U00096_4065653_4065712_a FALSE U00096 yihQ|ref|U00096 unmapped -1

Total number of rows: 45220

Table truncated, full table size 3376 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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