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Status
Public on Aug 28, 2016
Title
NAU-30K_Salmonella_Typhimurium_str_LT2 v1.0
Technology type
spotted DNA/cDNA
Distribution
custom-commercial
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Manufacturer
Mycroarray
Manufacture protocol
Each slide has one array composed of 30,721 potential addresses for probes, of which 26,346 spots contain 45-47mer probes for Salmonella enterica (SE) genes, 3,654 features are “empty” (i.e., they contain no probe), 608 features contain MYcroarray in-house QC probes and 112 features contain positive control probes for assessing hybridization and washing stringency. Each SE gene is surveyed by one unique probe sequence. There are 6 identical replicates of each SE probe sequence such that a total of 4,391 SE genes are surveyed by each array.
Submission date
Aug 30, 2013
Last update date
Aug 28, 2016
Contact name
Andrew Koppisch
E-mail(s)
andy.koppisch@nau.edu Organization name
Northern Arizona University
Department
Chemistry
Street address
PO Box 5698
City
Flagstaff
State/province
AZ
ZIP/Postal code
86001
Country
USA
Samples (9)
GSM1219916 , GSM1219917 , GSM1219918 , GSM1219919 , GSM1219920 , GSM1219921
Series (1)
GSE50480 Gene expression profiling of Salmonella enterica serovar Typhimurium exposed to subinhibitory concentrations of fosmidomycin and kanamycin
Data table header descriptions ID Row Row in array
Column Column in array
Name KEGG accession number of spotted sequence
ORF Gene name
Gene product Gene product
SPOT_ID
Data table ID Row Column Name ORF Gene product SPOT_ID 1
54
24
STM0002
thrA bifunctional aspartokinase I/homeserine
2
4
53
STM0003
thrB homoserine kinase
3
69
76
STM0004
thrC threonine synthase
4
29
22
STM0005
yaaA hypothetical protein
5
58
65
STM0006
yaaJ putative alanine/glycine transport protein
6
65
69
STM0007
talB transaldolase B
7
3
90
STM0008
mogA molybdenum cofactor biosynthesis protein MogA
8
5
47
STM0009
yaaH hypothetical protein
9
3
151
STM0010
htgA hypothetical protein
10
37
68
STM0011
yaaI hypothetical protein
11
30
38
STM0012
dnaK molecular chaperone DnaK
12
21
144
STM0013
dnaJ chaperone protein DnaJ
13
40
39
STM0014
putative transcriptional regulator
STM0014
14
65
147
STM0015
putative bacteriophage protein
STM0015
15
11
134
STM0016
hypothetical protein
STM0016
16
22
135
STM0017
hypothetical protein
STM0017
17
12
68
STM0018
putative exochitinase
STM0018
18
4
52
STM0019
putative hydroxymethyltransferase
STM0019
19
5
123
STM0020
putative cytoplasmic protein
STM0020
20
39
66
STM0021
bcfA fimbrial subunit
4391 241 Kbytes .Supplementary data files not provided
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