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Platform GPL17730 Query DataSets for GPL17730
Status Public on Sep 17, 2013
Title Salmonella Typhimurium 8 x 15
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Manufacturer Agilent
Manufacture protocol Agilent protocol : Agilent Low Input Quick Amp WT Labeling Kit, one-color, Agilent, 5190-2943
 
 
Submission date Sep 13, 2013
Last update date Sep 17, 2013
Contact name Vanessa Kuan Wong
E-mail(s) vanessawong@doctors.org.uk
Organization name Wellcome Trust Sanger Institute
Department Microbial Pathogenesis
Lab Professor Gordon Dougan (Team15)
Street address Wellcome Trust Genome Campus
City Hinxton
State/province Cambridgeshire
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Samples (12) GSM1231585, GSM1231586, GSM1231587, GSM1231588, GSM1231589, GSM1231590 
Series (1)
GSE50825 Gene expression analysis of yehUT two component regulatory system

Data table header descriptions
ID
COL
ROW
NAME
SPOT
CONTROL_TYPE
REFSEQ
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID

Data table
ID COL ROW NAME SPOT CONTROL_TYPE REFSEQ ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner GE_BrightCorner pos CONTROL
2 96 162 DarkCorner DarkCorner pos CONTROL
3 96 160 DarkCorner DarkCorner pos CONTROL
4 96 158 CUST_12279_PI426264791 CUST_12279_PI426264791 FALSE NC_SL1344_c3239063:3241676 ref|NC_SL1344_c3239063:3241676 unmapped CGCTGGTTATTGGGCGCAATATCGGTTTAATGGCGATGGAATTATTACCACCTG
5 96 156 CUST_2871_PI426264791 CUST_2871_PI426264791 FALSE NC_SL1344_1710516:1711031 ref|NC_SL1344_1710516:1711031 unmapped CGATAAGCTTGCAGATTATTTTGCAGGCAATCTCGCCGTAATTGATACCCTGGAAACC
6 96 154 CUST_10147_PI426264791 CUST_10147_PI426264791 FALSE NC_SL1344_c2001705:2002256 ref|NC_SL1344_c2001705:2002256 unmapped GTTCGCCGTGGCAAGATCGTTAATAAAATCGCTATTTCACAGCTGGATATGCTACTTGAC
7 96 152 CUST_14349_PI426264791 CUST_14349_PI426264791 FALSE NC_SL1344_c4580660:4581155 ref|NC_SL1344_c4580660:4581155 unmapped GATATCATCTTCAGAGATCGTTCCGCAAACGCTATGGATAATTCTTCGCTGTCTATCGGC
8 96 150 CUST_5181_PI426264791 CUST_5181_PI426264791 FALSE NC_SL1344_3538294:3539364 ref|NC_SL1344_3538294:3539364 unmapped ATTATTACCAACAAACACGTGATTAACGATGCCGATCAGATTATCGTCGCGCTACAGGAT
9 96 148 CUST_13411_PI426264791 CUST_13411_PI426264791 FALSE NC_SL1344_c3898534:3898606 ref|NC_SL1344_c3898534:3898606 unmapped CTCACCCCAGTCACGTACTTATGTACGCTCCTGGGGATTCACTGCGTTG
10 96 146 CUST_8136_PI426264791 CUST_8136_PI426264791 FALSE NC_SL1344_c765750:769692 ref|NC_SL1344_c765750:769692 unmapped GATTTTCATGAGGATATGTGACAAACGTTCTGATTGTTGAAGATGAACAGGCCATCCGCC
11 96 144 CUST_5966_PI426264791 CUST_5966_PI426264791 FALSE NC_SL1344_4130518:4132424 ref|NC_SL1344_4130518:4132424 unmapped AATATAAATATTGAATTGACCGTTGCCAGTCCCCGGTCGGTCGACTTACTGTTTAGTCAG
12 96 142 CUST_8660_PI426264791 CUST_8660_PI426264791 FALSE NC_SL1344_c1171598:1172479 ref|NC_SL1344_c1171598:1172479 unmapped CATTACCCATAATCTGGGTTCTCCATTATGTGAAGAGGCCGATTTTTGCCTGATCAATGG
13 96 140 CUST_12126_PI426264791 CUST_12126_PI426264791 FALSE NC_SL1344_c3165738:3173996 ref|NC_SL1344_c3165738:3173996 unmapped TTTTTCAGCAGGGGTTTAGCGATATAGAGAAGCGTACATTGCAAAGCAGCGACGATTATG
14 96 138 CUST_4989_PI426264791 CUST_4989_PI426264791 FALSE NC_SL1344_3404992:3405147 ref|NC_SL1344_3404992:3405147 unmapped GGATCGCAATTTGCGATTAATCCTTAATATTTGTACGATTTTCACCTCATCCTGCGCCTT
15 96 136 CUST_11169_PI426264791 CUST_11169_PI426264791 FALSE NC_SL1344_c2584805:2585400 ref|NC_SL1344_c2584805:2585400 unmapped AATTATTTTACTCTGCGCAACATTACCTATGACCTGACCCGTCGTAATGGCGAGGTTATC
16 96 134 CUST_11155_PI426264791 CUST_11155_PI426264791 FALSE NC_SL1344_c2576231:2576566 ref|NC_SL1344_c2576231:2576566 unmapped GGTCAGCGGGCTGGGGCGATTATTAAACTTTACCCTGTGTGAGTTAACAAAAAGTTAA
17 96 132 CUST_7627_PI426264791 CUST_7627_PI426264791 FALSE NC_SL1344_c429544:429804 ref|NC_SL1344_c429544:429804 unmapped GTTATCACAAGCGCTCTATCACAAAAGTAAACATTCTCCATCACGAAAACCCGCCGTTAC
18 96 130 CUST_10251_PI426264791 CUST_10251_PI426264791 FALSE NC_SL1344_c2047582:2048922 ref|NC_SL1344_c2047582:2048922 unmapped CATTCTCGTTGTCAGGTATTTCTGATTTTATCCAGAACGATGTCATTGCCGATGCAGCC
19 96 128 CUST_3976_PI426264791 CUST_3976_PI426264791 FALSE NC_SL1344_2594563:2594673 ref|NC_SL1344_2594563:2594673 unmapped GTGCCTTCCAGGCATTTATTTACGAAGCATGACTTCGATAAAATCTTTCCAGTTCCCCAG
20 96 126 CUST_1814_PI426264791 CUST_1814_PI426264791 FALSE NC_SL1344_1082840:1085412 ref|NC_SL1344_1082840:1085412 unmapped CAACACCAGAATGCCTTTAATGAACTGAAGAAAAAGACGCTCACATTAACCAGCCAGCTC

Total number of rows: 15335

Table truncated, full table size 2692 Kbytes.




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