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Platform GPL17807 Query DataSets for GPL17807
Status Public on Oct 22, 2013
Title Agilent-034134 human gut microbiota CAZyme Microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism human gut metagenome
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Microarray design of CAZyme genes in human gut microbiota

Arrays of this design have barcodes that begin with 16034134 or 2534134.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Oct 21, 2013
Last update date Oct 22, 2013
Contact name Abdessamad EL KAOUTARI
E-mail(s) samad.elk@gmail.com
Phone 0627334803
Organization name INSERM
Lab CRCM, UMR 1068
Street address 27 boulevard Lei Roure
City Marseille
State/province France
ZIP/Postal code 13273
Country France
 
Samples (8) GSM1252044, GSM1252045, GSM1252046, GSM1252047, GSM1252048, GSM1252049 
Series (1)
GSE51760 Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String (protein)
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Probe Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 CUST_3633_PI426370169 CUST_3633_PI426370169 FALSE ACR71183.1 unmapped ATAATGTATCTCTTCCGCTGGCAATAGATGTAGAGAGTGCAGGAAATGGAAGCGGAAGAG
5 192 320 CUST_18735_PI426370169 CUST_18735_PI426370169 FALSE CBK86387.1 unmapped GCAAGAAATCATTCTGGTGGTATAAGAAGGTGATTGCGAGTAACGGGGGGGATCTGGAGT
6 192 318 CUST_7467_PI426370169 CUST_7467_PI426370169 FALSE ZP_04445846.1 unmapped CCTCGAATCTCTTGATGTCAATTTGGGGAATGACGTTGGGTCCGGAGAAATTGAAGTTAG
7 192 316 CUST_8515_PI426370169 CUST_8515_PI426370169 FALSE ACD98768.1 unmapped CTACATCTATCAGGGCGAGGAGCTGGGTCTGTTCGAGGTTGCCGATATTCCGTGGGATCG
8 192 314 CUST_9036_PI426370169 CUST_9036_PI426370169 FALSE ABX31549.1 unmapped AGAGTGGATATAGGCTTAATGCAATATGCGGATCAAGTATGGACAAGCGACAACACAGAC
9 192 312 CUST_2717_PI426370169 CUST_2717_PI426370169 FALSE AAO80613.1 unmapped ATTTAATTTTTGCTGGTCAAACAATCATCGTGAAAAAAGGCGCTTCTGCAGGTGGCAATG
10 192 310 CUST_462_PI426328854 CUST_462_PI426328854 FALSE ACZ24794.1 unmapped GCAATTGGGGAAACCGAATGCGGCTCATGATATTGCAAAATTAGCTTTATCTATTGCAAA
11 192 308 CUST_17205_PI426370169 CUST_17205_PI426370169 FALSE ADE89085.1 unmapped GGAAACAAACATCAACATTGGCACCAGTTACCTGCAATATGTTTATCAGCAGTTTGGCAA
12 192 306 CUST_18806_PI426370169 CUST_18806_PI426370169 FALSE ABV12225.1 unmapped GTATGTGGAAGAGGCGATTTATCAGTTCCTGCTGCACGTACAGAATCTGATGGATAAAGA
13 192 304 CUST_1210_PI426370169 CUST_1210_PI426370169 FALSE CAR88002.1 unmapped ATGTTCCAGATGGTGATCACGATCAACTGTTGATCAATCTTGACTCAGATAGTGGCCAAG
14 192 302 CUST_9850_PI426370169 CUST_9850_PI426370169 FALSE ZP_02067180.1 unmapped GGCGAATGTTCTGTTGCTGAAATAGGAGAGGGAACTTTAATGTTGAATATGAGAGCGGAT
15 192 300 CUST_128_PI426370169 CUST_128_PI426370169 FALSE AAV43190.1 unmapped TGACCAAGGAGAAGCTTGTTTTTATGCCCCACAAGGTCAAGGTAAATGGATTAGTTTACT
16 192 298 CUST_15040_PI426370169 CUST_15040_PI426370169 FALSE ZP_02030321.1 unmapped TTCAAGATCTACTATACGACAGACGGAACGGAACCATCGGCAGGCTCTACCGAATATAAA
17 192 296 CUST_2110_PI426370169 CUST_2110_PI426370169 FALSE ZP_05746620.1 unmapped TGACATTGACAAGTGGGAAGACTTTTTCAAGCAAAGTGATTTTGCTAACGTTGTCCTGGA
18 192 294 CUST_3189_PI426370169 CUST_3189_PI426370169 FALSE ZP_02027413.1 unmapped GGGAAAGTGTGATGGTGATGCAGCAGCAACTAATTCAGCAGCAAACATTACTTTATCTAA
19 192 292 CUST_15310_PI426370169 CUST_15310_PI426370169 FALSE CBK63831.1 unmapped ATGACTTTTCCGGCGGATTATTCGGATCATCCGTCATCGAAGAATTTTCCGCTCGACTAT
20 192 290 CUST_19010_PI426370169 CUST_19010_PI426370169 FALSE ABS49253.1 unmapped AACGGATCGTGATATGGGATCTCTACAACGAGCCAACCAACCGTATGATTTTCACCTTAG

Total number of rows: 62976

Table truncated, full table size 8842 Kbytes.




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Supplementary file Size Download File type/resource
GPL17807_034134_D_GEO_20110509.txt.gz 2.3 Mb (ftp)(http) TXT

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