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Platform GPL18088 Query DataSets for GPL18088
Status Public on Jan 10, 2014
Title Agilent-026035 Scer_barcode_v2_200911
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae S288C
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Yeast KO collection barcode specific microarray, v2
Arrays of this design have barcodes that begin with 16026035 or 2526035.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Dec 19, 2013
Last update date Jan 10, 2014
Contact name Cosmin Saveanu
Organization name Institut Pasteur
Department Genomes and Genetics
Lab Genetique des Interactions Macromoleculaires
Street address 25-28 rue du docteur Roux
City Paris
ZIP/Postal code 75015
Country France
 
Samples (338) GSM1303988, GSM1303989, GSM1303990, GSM1303991, GSM1303992, GSM1303993 
Series (6)
GSE53954 Expression analysis of DamP mRNAs using expressed molecular barcodes
GSE60934 Saccharomyces cerevisiae deletion collections chemogenomic screen with sr7575
GSE84340 Saccharomyces cerevisiae deletion and DAmP collections chemogenomic screen with Selenomethionine

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ORF Gene Name
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GENE_SYMBOL ORF CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 YHR044C-U YHR044C-U FALSE DOG1 YHR044C unmapped tag_1011 CCTTCTTGAGGATGTGAGAT YHR044C chr8_1 CCTTCTTGAGGATGTGAGAT
5 96 156 YNL054W-D YNL054W-D FALSE VAC7 YNL054W unmapped tag_5717 AACGACGATGAACAGGTGCC YNL054W chr14_3 AACGACGATGAACAGGTGCC
6 96 154 YLR259C-U YLR259C-U FALSE HSP60 YLR259C unmapped tag_9976 GGAGCACCATCATTTCAAGC YLR259C chr12_4 GGAGCACCATCATTTCAAGC
7 96 152 YDR427W-U2 YDR427W-U2 FALSE RPN9 YDR427W unmapped tag_6545 CGTTCAACAGAAGTCTTGGA YDR427W chr00_11 CGTTCAACAGAAGTCTTGGA
8 96 150 YFL003C-D YFL003C-D FALSE MSH4 YFL003C unmapped tag_11003 CATACTTCGACAGATCCGAG YFL003C chr00_17a CATACTTCGACAGATCCGAG
9 96 148 YBL079W-D YBL079W-D FALSE NUP170 YBL079W unmapped tag_5897 AATCAGCCGTAACGTGAGAG YBL079W chr2_1 AATCAGCCGTAACGTGAGAG
10 96 146 YER018C-D YER018C-D FALSE SPC25 YER018C unmapped tag_633 AATGGTCGCTCAGTCCTGCT YER018C chr5_3 AATGGTCGCTCAGTCCTGCT
11 96 144 YGR145W-D YGR145W-D FALSE ENP2 YGR145W unmapped tag_3335 CGATTATTGGCATCTGCGGT YGR145W chr00_15 CGATTATTGGCATCTGCGGT
12 96 142 YDL176W-U YDL176W-U FALSE YDL176W YDL176W unmapped tag_6954 CATCGTAGACTCCTAGTAGT YDL176W chr4_2 CATCGTAGACTCCTAGTAGT
13 96 140 YMR026C-U YMR026C-U FALSE PEX12 YMR026C unmapped tag_315 CAGAGCTTCTCAAGTACGGC YMR026C chr13_2 CAGAGCTTCTCAAGTACGGC
14 96 138 YDL058W-U YDL058W-U FALSE USO1 YDL058W unmapped tag_6739 CGATTCGGACTAATGAGTTC YDL058W chr00_17a CGATTCGGACTAATGAGTTC
15 96 136 YGR173W-D YGR173W-D FALSE RBG2 YGR173W unmapped tag_9323 GGGCTGAAGACACACCACTA YGR173W chr7_5 GGGCTGAAGACACACCACTA
16 96 134 YNL323W-U YNL323W-U FALSE LEM3 YNL323W unmapped tag_1317 AGTGAGACTGTGTGACATCT YNL323W chr14_1 AGTGAGACTGTGTGACATCT
17 96 132 YPR008W-U YPR008W-U FALSE HAA1 YPR008W unmapped tag_10523 AACAGATAGTTGAACGGGTC YPR008W chr00_15 AACAGATAGTTGAACGGGTC
18 96 130 YDR426C-D YDR426C-D FALSE YDR426C YDR426C unmapped tag_8206 AAGCTACCTTCAGTGGTCGT YDR426C chr4_7 AAGCTACCTTCAGTGGTCGT
19 96 128 YNL043C-D YNL043C-D FALSE YNL043C YNL043C unmapped tag_11232 ATTATAGAGCTAGGGACACG YNL043C chr14_4 ATTATAGAGCTAGGGACACG
20 96 126 YFL034W-U YFL034W-U FALSE YFL034W YFL034W unmapped tag_10941 TCAGAGGCGTAAGCACTCAG YFL034W chr6_1 TCAGAGGCGTAAGCACTCAG

Total number of rows: 15744

Table truncated, full table size 1921 Kbytes.




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