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Platform GPL19121 Query DataSets for GPL19121
Status Public on Aug 13, 2015
Title [FRAGDIFFa520673F] Affymetrix B. fragilis NCTC 9343 and C. difficile 630 array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Bacteroides fragilis NCTC 9343; Clostridioides difficile 630
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description The GPL14584 contains reads for B. fragilis and this platform contains reads for C. difficile strain 630 in addition to B. fragilis.
 
Submission date Aug 26, 2014
Last update date Aug 13, 2015
Contact name Justin L Sonnenburg
E-mail(s) jsonnenburg@stanford.edu
Phone (650) 721-2961
Organization name Stanford University
Department Microbiology and Immunology
Lab Justin Sonnenburg lab
Street address Fairchild D315
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Samples (20) GSM1487077, GSM1487078, GSM1487079, GSM1487080, GSM1487081, GSM1487082 
Series (1)
GSE60751 The in vivo responses elicited by Clostridium difficile in response to the gut commensal B. thetaiotaomicron and diet

Data table header descriptions
ID
ORF Locus tag
Code COG functional category
COG
Chromosome
ORGANISM
GENOME_ACC
startpos
endpos
Description
SPOT_ID

Data table
ID ORF Code COG Chromosome ORGANISM GENOME_ACC startpos endpos Description SPOT_ID
BF0001_at BF0001 J COG0566J Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 67 594 putative SpoU rRNA methylase family protein
BF0002_at BF0002 MU COG1538MU Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 749 2218 putative outer membrane protein
BF0003_at BF0003 Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 2211 3182 hypothetical protein
BF0004_at BF0004 M COG0463M Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 3196 4035 putative sugar transferase
BF0005_at BF0005 Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 4069 4602 hypothetical protein
BF0006_at BF0006 R COG2312R Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 4663 6468 hypothetical protein
BF0007_at BF0007 Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 6658 8469 hypothetical protein
BF0008_at BF0008 M COG0438M Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 8625 9743 putative glycosyltransferase
BF0009_at BF0009 M COG3306M Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 9724 10392 putative glycosyltransferase
BF0010_at BF0010 M COG0845M Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 10512 11747 hypothetical protein
BF0011_at BF0011 V COG2274V Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 11752 13935 putative ABC transporter ATP-binding protein
BF0012_at BF0012 Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 14052 14651 hypothetical protein
BF0013_at BF0013 L COG1555L Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 14771 16798 hypothetical protein
BF0014_at BF0014 C COG0731C Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 16856 17629 putative SAM superfamily protein
BF0015_at BF0015 R COG1853R Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 17671 18180 hypothetical protein
BF0016_at BF0016 P COG3119P Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 18198 19811 putative arylsulfatase precursor
BF0017_at BF0017 S COG3182S Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 19915 20418 iron transport-like transmembrane protein
BF0018_at BF0018 P COG1629P Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 20542 22956 putative iron transport receptor protein
BF0019_at BF0019 P COG0659P Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 23157 24836 putative sulfate permease transmembrane protein
BF0020_at rbr C COG1592C Bacfrag9343_chr Bacteroides fragilis NCTC 9343 NC_003228.3 25097 25675 putative rubrerythrin

Total number of rows: 8729

Table truncated, full table size 1111 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL19121_Frag-DIFF_annotation.txt.gz 203.1 Kb (ftp)(http) TXT

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