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Platform GPL19254 Query DataSets for GPL19254
Status Public on Oct 02, 2014
Title NimbleGen Pfalciparum 385k array v1.0 [2005-05-10_Plasmodium_3D7_WG_CGH]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Plasmodium falciparum 3D7
Manufacturer NimbleGen
Manufacture protocol See manufacturer's web site www.nimblegen.com
 
Description Plasmodium falciparum 3D7 genome (Genome Build from 2005)
 
Submission date Oct 01, 2014
Last update date Oct 02, 2014
Contact name Michael Ferdig
E-mail(s) ferdig.1@nd.edu
Phone (574)631-9973
Organization name University of Notre Dame
Department Biological Sciences
Lab Ferdig Lab
Street address 280 Galvin Life Science
City Notre Dame
State/province IN
ZIP/Postal code 46556
Country USA
 
Samples (2) GSM1517504, GSM1517505
Series (1)
GSE61940 Comparative Genomic Hybridizaions of 3D7∆PfSir2a and NF54 compared to reference strain 3D7

Data table header descriptions
ID
SEQUENCE Sequence of oligo
CHROMOSOME Chromosomal location
RANGE_START
LENGTH Oligo length

Data table
ID SEQUENCE CHROMOSOME RANGE_START LENGTH
CHR0900P001192597 TTATTATTTATAACTTTTTTATTGTCATTTTTATATTTCTCTTTTGAATCATT chr9 1192597 53
CHR1300P001130523 TTATTTATAATATGTTTACATAGATATGATCAATTTTATTCTCTTTATACCTTTGAATA chr13 1130523 59
CHR0800P000671666 AAAATGTGTTATTACTTGGTAAAAATGGAATTGGTAAATCCACACTTTTTA chr8 671666 51
CHR1100P001595677 TATTCTTCAATATGTATGTCGAAATAGTACTAATATATATTAGGTTACAAAAATGTGGA chr11 1595677 59
CHR0700P001081251 AAAAACTCTTTTCTAAAATTAAAATGTGTCATGAAAAGTTTGAACCATACC chr7 1081251 51
CHR1200P001383977 TTATATATGATAAGAGTTAAAAGTTGACAATATAATTATATATGATATTGTTTGATTTT chr12 1383977 59
CHR1300P000153329 AATATAGAAACACTTGTTTCTAAATTTATAACAAACATTATTTTATCATTATAG chr13 153329 54
CHR0400P000731277 AAATAAATACTATTTATATAACATCCTTTCAGGAGGGAATATGAGAAGTGTATTAA chr4 731277 56
CHR0700P001025255 TATTATTGTTACAAAGAAGGTTATTATAAAGATTATTATTATAAAGATTATTAT chr7 1025255 54
CHR1100P001063561 ATAAATAGAGTACGTAAATTATAATACACACTATAGGATATTCTGCAACAAAATTT chr11 1063561 56
CHR0200P000827349 ATTGTTTCATAATCGTAAGTCTCAAAAGAAATTACATCTATATAAACTTTGTAAGA chr2 827349 56
CHR0200P000902189 GTAGTGGTCATCAATAAGTTCCTTATAATATTGATTGGAATATTCGAATAAACACTTA chr2 902189 58
CHR1000P000670353 ATACGCATACATATTATGATCACTATAATTTTCACCATGTTTCTGATAAACGAGTTTTTCA chr10 670353 61
CHR0400P000442481 ACTTATTCAATATTAATACAACTTATAATTTTTCAAAAATAAGAATGTAAAA chr4 442481 52
CHR0500P000328837 TATATAAACATTCATCATTAGATTATCTTGTTCATCATTTGATTGACAAATACATGTAAAATCAA chr5 328837 65
CHR0700P000950922 TTTTTATCATAGAGACTACTTTTAAAATGTCACCAAAATTGTAAAAATGTGATATA chr7 950922 56
CHR1300P000881469 ATTATTATGTTCAGTAGGTGGTTGAACGAAAGACTTAACACAATGAATATTATTAT chr13 881469 56
CHR1200P000438553 GTATGGATATTCCCACCTGACATATATTTTTATATTTGAATATTATCATTCTGTCACACTAT chr12 438553 62
CHR1400P000017445 AATTTAATATCAAGAAATCATATATTTATTGATTTAATAATTTTGTGTATTGTTGT chr14 17445 56
CHR1400P001595971 TTTATATACAACAACGGATGTGGACATAAACGAATTTATACCATATAGTAGATATAAGA chr14 1595971 59

Total number of rows: 385585

Table truncated, full table size 34417 Kbytes.




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Supplementary file Size Download File type/resource
GPL19254_2005-05-10_Plasmodium_3D7_WG_CGH.ndf.gz 22.4 Mb (ftp)(http) NDF
GPL19254_2005-05-10_Plasmodium_3D7_WG_CGH.pos.gz 4.0 Mb (ftp)(http) POS

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