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Platform GPL21871 Query DataSets for GPL21871
Status Public on Sep 06, 2016
Title Agilent-062039 RoboArbovirusChip V2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Viruses
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16062039 or 2562039.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 12, 2016
Last update date Sep 08, 2016
Contact name Victor Hugo Aquino
E-mail(s) vhugo@fcfrp.usp.br
Phone 55-16-33154510
Organization name University of Sao Paulo
Department Fculty of Pharmaceutical Sciences
Lab Laboratory of Virology
Street address Avenida do Cafe, s/n
City Ribeirao Preto
State/province Sao Paulo
ZIP/Postal code 14040-903
Country Brazil
 
Samples (102) GSM2151785, GSM2151786, GSM2151787, GSM2151788, GSM2151789, GSM2151790 
Series (3)
GSE81392 DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods
GSE81393 DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods
GSE168657 Screening of virus infection in suspected malaria patients in the city of Manaus in the Amazon region of Brazil

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE_NAME
SPOT_ID Spot identifier
NAME virus name
GENUS
FAMILY
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW PROBE_NAME SPOT_ID NAME GENUS FAMILY CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner Agilent_Bright corner control pos
2 96 162 DarkCorner DarkCorner Agilent_Dark corner control pos
3 96 160 DarkCorner DarkCorner Agilent_Dark corner control pos
4 96 158 CARRV_S_3 CARRV_S_3 Carrizal virus Hantavirus Bunyaviridae FALSE unmapped CATCATGGCCTCAAAGGCTGTTGGCACTGCAGAAGAGAAAATGAAAAAAAAGTCTGCTTT
5 96 156 ORXV_S_2 ORXV_S_2 Oriximina virus Phlebovirus Bunyaviridae FALSE unmapped ACTGGGTTGAAGATGCAAAGAAGATGATCATTCTGTGCCTTACTAGAGGGAATAAACCAT
6 96 154 NIQV_S_2 NIQV_S_2 Nique virus Phlebovirus Bunyaviridae FALSE unmapped TTCTAGAACTATCAACCCGAGAAATCGTGGATTATCCACCTCAGAAGTGTTATCAACTTT
7 96 152 HUIV_M_3 HUIV_M_3 Huitzilac virus Hantavirus Bunyaviridae FALSE unmapped CCGGTATAAAAGCCGTTGCTATGTTGGGCTTGTGTGGGGCTGTCTATTGACTATTGAACT
8 96 150 CHUV_VP1_4 CHUV_VP1_4 Chuzan Virus Orbivirus Reoviridae FALSE unmapped GGCGATTTTGTATGCATCGCAACTTCTGATGATTCGGGCGGCACATGGACATCATCCGGG
9 96 148 AURAV_6 AURAV_6 Aura virus Alphavirus Togaviridae FALSE unmapped TGTACGTATATTCCACCTTCAATCTGTGACCAAATGACAGGTATATTGGCCACTGATATC
10 96 146 NORV_L_3 NORV_L_3 Northway virus Orthobunyavirus Bunyaviridae FALSE unmapped GGGGAATTTTTAATCATCCTGGATTACAAAGTCTCCGTTGGTCATGATAGCACAGAAATT
11 96 144 CVOV_M_5 CVOV_M_5 Calovo virus Orthobunyavirus Bunyaviridae FALSE unmapped CTATGGCATTTAAACTTAGGGATGTATTAAAAAGGAATGAATATCTATATCTACAGGAGA
12 96 142 OROV_L_3 OROV_L_3 Oropouche virus Orthobunyavirus Bunyaviridae FALSE unmapped GCGACTCGAAACTAAGGGTATTAGAGAAGCAATCAGAAGACGAAATCAGGTATATTAGCA
13 96 140 ELMCV_S_1 ELMCV_S_1 El Moro Canyon virus Hantavirus Bunyaviridae FALSE unmapped CACAATCAATGGGAATTCAACTGGATCAAAGGATCATAATTATGTACATGTCTCACTGGG
14 96 138 ARTV_L_5 ARTV_L_5 Artybash virus Hantavirus Bunyaviridae FALSE unmapped TGGAATGTCTCTGCTATTTAAGAGAGTCTGGAAAGAATTATTTCCAGAATTAGAATGTTT
15 96 136 WNV_10 WNV_10 West Nile virus Flavivirus Flaviviridae FALSE unmapped GGAGCAGTGCTGGAAGTACTGTGTGGAGGAACAGAGAGACGTTAATGGAGTTTGAGGAAC
16 96 134 SAAV_S_2 SAAV_S_2 Saaremaa virus Hantavirus Bunyaviridae FALSE unmapped GACTAGATCCTGGTGATCACCTGAAGGAGAAATCAATGCTTAGTTATGGAAATGTCATTG
17 96 132 MURV_S_1 MURV_S_1 Murutucu virus Orthobunyavirus Bunyaviridae FALSE unmapped CGTAGGTCATCCGAACTTCTGGTTTCCCTTACACTTGGAGGTGTTAACCTTGCGGTACTT
18 96 130 BUNYA_ORTH_2 BUNYA_ORTH_2 Orthobunyavirus Generic Probes Generic Probes FALSE unmapped GGTGTTTCCAAGATGGGGCTATAGTGAAGCAAAACCC
19 96 128 AMTV_M_2 AMTV_M_2 Arumowot virus Phlebovirus Bunyaviridae FALSE unmapped TGTGAATATTTCAACTACACTGAAAACTATATTGGTGGCTGCACTCTTAACTTCTGCTTT
20 96 126 LEAV_L_2 LEAV_L_2 Leanyer virus Orthobunyavirus Bunyaviridae FALSE unmapped ATGAAAGAGACTTAACATCTATCTGGTTTCCAGGTTTAGTGAACTTGAAAGAATATATAA

Total number of rows: 15744

Table truncated, full table size 2209 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL21871_GEO_062039_D_GEO_20131114.txt.gz 481.6 Kb (ftp)(http) TXT
GPL21871_RoboArboChip_v2_Annotation.xlsx 569.9 Kb (ftp)(http) XLSX

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