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Status
Public on Sep 06, 2016
Title
Agilent-062039 RoboArbovirusChip V2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Viruses
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16062039 or 2562039. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
May 12, 2016
Last update date
Sep 08, 2016
Contact name
Victor Hugo Aquino
E-mail(s)
vhugo@fcfrp.usp.br
Phone
55-16-33154510
Organization name
University of Sao Paulo
Department
Fculty of Pharmaceutical Sciences
Lab
Laboratory of Virology
Street address
Avenida do Cafe, s/n
City
Ribeirao Preto
State/province
Sao Paulo
ZIP/Postal code
14040-903
Country
Brazil
Samples (102)
GSM2151785 , GSM2151786 , GSM2151787 , GSM2151788 , GSM2151789 , GSM2151790
GSM2151791 ,
GSM5155240 ,
GSM5155241 ,
GSM5155242 ,
GSM5155243 ,
GSM5155244 ,
GSM5155245 ,
GSM5155246 ,
GSM5155247 ,
GSM5155248 ,
GSM5155249 ,
GSM5155250 ,
GSM5155251 ,
GSM5155252 ,
GSM5155253 ,
GSM5155254 ,
GSM5155255 ,
GSM5155256 ,
GSM5155257 ,
GSM5155258 ,
GSM5155259 ,
GSM5155260 ,
GSM5155261 ,
GSM5155262 ,
GSM5155263 ,
GSM5155264 ,
GSM5155265 ,
GSM5155266 ,
GSM5155267 ,
GSM5155268 ,
GSM5155269 ,
GSM5155270 ,
GSM5155271 ,
GSM5155272 ,
GSM5155273 ,
GSM5155274 ,
GSM5155275 ,
GSM5155276 ,
GSM5155277 ,
GSM5155278 ,
GSM5155279 ,
GSM5155280 ,
GSM5155281 ,
GSM5155282 ,
GSM5155283 ,
GSM5155284 ,
GSM5155285 ,
GSM5155286 ,
GSM5155287 ,
GSM5155288 ,
GSM5155289 ,
GSM5155290 ,
GSM5155291 ,
GSM5155292 ,
GSM5155293 ,
GSM5155294 ,
GSM5155295 ,
GSM5155296 ,
GSM5155297 ,
GSM5155298 ,
GSM5155299 ,
GSM5155300 ,
GSM5155301 ,
GSM5155302 ,
GSM5155303 ,
GSM5155304 ,
GSM5155305 ,
GSM5155306 ,
GSM5155307 ,
GSM5155308 ,
GSM5155309 ,
GSM5155310 ,
GSM5155311 ,
GSM5155312 ,
GSM5155313 ,
GSM5155314 ,
GSM5155315 ,
GSM5155316 ,
GSM5155317 ,
GSM5155318 ,
GSM5155319 ,
GSM5155320 ,
GSM5155321 ,
GSM5155322 ,
GSM5155323 ,
GSM5155324 ,
GSM5155325 ,
GSM5155326 ,
GSM5155327 ,
GSM5155328 ,
GSM5155329 ,
GSM5155330 ,
GSM5155331 ,
GSM5155332 ,
GSM5155333 ,
GSM5155334
Series (3)
GSE81392
DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods
GSE81393
DNA Microarray Platform for Detection and Surveillance of Viruses Transmitted by Small Mammals and Arthropods
GSE168657
Screening of virus infection in suspected malaria patients in the city of Manaus in the Amazon region of Brazil
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
PROBE_NAME
SPOT_ID
Spot identifier
NAME
virus name
GENUS
FAMILY
CONTROL_TYPE
Control type
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
COL
ROW
PROBE_NAME
SPOT_ID
NAME
GENUS
FAMILY
CONTROL_TYPE
CHROMOSOMAL_LOCATION
SEQUENCE
1
96
164
GE_BrightCorner
GE_BrightCorner
Agilent_Bright corner control
pos
2
96
162
DarkCorner
DarkCorner
Agilent_Dark corner control
pos
3
96
160
DarkCorner
DarkCorner
Agilent_Dark corner control
pos
4
96
158
CARRV_S_3
CARRV_S_3
Carrizal virus
Hantavirus
Bunyaviridae
FALSE
unmapped
CATCATGGCCTCAAAGGCTGTTGGCACTGCAGAAGAGAAAATGAAAAAAAAGTCTGCTTT
5
96
156
ORXV_S_2
ORXV_S_2
Oriximina virus
Phlebovirus
Bunyaviridae
FALSE
unmapped
ACTGGGTTGAAGATGCAAAGAAGATGATCATTCTGTGCCTTACTAGAGGGAATAAACCAT
6
96
154
NIQV_S_2
NIQV_S_2
Nique virus
Phlebovirus
Bunyaviridae
FALSE
unmapped
TTCTAGAACTATCAACCCGAGAAATCGTGGATTATCCACCTCAGAAGTGTTATCAACTTT
7
96
152
HUIV_M_3
HUIV_M_3
Huitzilac virus
Hantavirus
Bunyaviridae
FALSE
unmapped
CCGGTATAAAAGCCGTTGCTATGTTGGGCTTGTGTGGGGCTGTCTATTGACTATTGAACT
8
96
150
CHUV_VP1_4
CHUV_VP1_4
Chuzan Virus
Orbivirus
Reoviridae
FALSE
unmapped
GGCGATTTTGTATGCATCGCAACTTCTGATGATTCGGGCGGCACATGGACATCATCCGGG
9
96
148
AURAV_6
AURAV_6
Aura virus
Alphavirus
Togaviridae
FALSE
unmapped
TGTACGTATATTCCACCTTCAATCTGTGACCAAATGACAGGTATATTGGCCACTGATATC
10
96
146
NORV_L_3
NORV_L_3
Northway virus
Orthobunyavirus
Bunyaviridae
FALSE
unmapped
GGGGAATTTTTAATCATCCTGGATTACAAAGTCTCCGTTGGTCATGATAGCACAGAAATT
11
96
144
CVOV_M_5
CVOV_M_5
Calovo virus
Orthobunyavirus
Bunyaviridae
FALSE
unmapped
CTATGGCATTTAAACTTAGGGATGTATTAAAAAGGAATGAATATCTATATCTACAGGAGA
12
96
142
OROV_L_3
OROV_L_3
Oropouche virus
Orthobunyavirus
Bunyaviridae
FALSE
unmapped
GCGACTCGAAACTAAGGGTATTAGAGAAGCAATCAGAAGACGAAATCAGGTATATTAGCA
13
96
140
ELMCV_S_1
ELMCV_S_1
El Moro Canyon virus
Hantavirus
Bunyaviridae
FALSE
unmapped
CACAATCAATGGGAATTCAACTGGATCAAAGGATCATAATTATGTACATGTCTCACTGGG
14
96
138
ARTV_L_5
ARTV_L_5
Artybash virus
Hantavirus
Bunyaviridae
FALSE
unmapped
TGGAATGTCTCTGCTATTTAAGAGAGTCTGGAAAGAATTATTTCCAGAATTAGAATGTTT
15
96
136
WNV_10
WNV_10
West Nile virus
Flavivirus
Flaviviridae
FALSE
unmapped
GGAGCAGTGCTGGAAGTACTGTGTGGAGGAACAGAGAGACGTTAATGGAGTTTGAGGAAC
16
96
134
SAAV_S_2
SAAV_S_2
Saaremaa virus
Hantavirus
Bunyaviridae
FALSE
unmapped
GACTAGATCCTGGTGATCACCTGAAGGAGAAATCAATGCTTAGTTATGGAAATGTCATTG
17
96
132
MURV_S_1
MURV_S_1
Murutucu virus
Orthobunyavirus
Bunyaviridae
FALSE
unmapped
CGTAGGTCATCCGAACTTCTGGTTTCCCTTACACTTGGAGGTGTTAACCTTGCGGTACTT
18
96
130
BUNYA_ORTH_2
BUNYA_ORTH_2
Orthobunyavirus
Generic Probes
Generic Probes
FALSE
unmapped
GGTGTTTCCAAGATGGGGCTATAGTGAAGCAAAACCC
19
96
128
AMTV_M_2
AMTV_M_2
Arumowot virus
Phlebovirus
Bunyaviridae
FALSE
unmapped
TGTGAATATTTCAACTACACTGAAAACTATATTGGTGGCTGCACTCTTAACTTCTGCTTT
20
96
126
LEAV_L_2
LEAV_L_2
Leanyer virus
Orthobunyavirus
Bunyaviridae
FALSE
unmapped
ATGAAAGAGACTTAACATCTATCTGGTTTCCAGGTTTAGTGAACTTGAAAGAATATATAA
Total number of rows: 15744 Table truncated, full table size 2209 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL21871_GEO_062039_D_GEO_20131114.txt.gz
481.6 Kb
(ftp) (http)
TXT
GPL21871_RoboArboChip_v2_Annotation.xlsx
569.9 Kb
(ftp) (http)
XLSX