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Platform GPL24100 Query DataSets for GPL24100
Status Public on Mar 01, 2018
Title Agilent-082421 Oryzias latipes Medaka_Genome83_Mitochondrie
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryzias latipes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16082421 or 2582421.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 09, 2017
Last update date Mar 01, 2018
Contact name Aurelie LE CAM
E-mail(s) aurelie.le-cam@inrae.fr
Organization name INRA
Department PHASE
Lab LPGP
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35042
Country France
 
Samples (16) GSM2806696, GSM2806697, GSM2806698, GSM2806699, GSM2806700, GSM2806701 
Series (2)
GSE104726 A novel evolutionary conserved mechanism of RNA stability regulates synexpression of primordial germ cell-specific genes prior to the sex-determination stage
GSE111388 The microARN-202 (miR-202) controls female fecundity by regulating oogenesis in medaka

Data table header descriptions
ID Agilent Probe Name
CLONE_ID clone ID
GENE_SYMBOL Gene Symbol
ORF Gene Name
CONTROL_TYPE Control type
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
SPOT_ID Spot identifier

Data table
ID CLONE_ID GENE_SYMBOL ORF CONTROL_TYPE ENSEMBL_ID ACCESSION_STRING SPOT_ID
GE_BrightCorner pos control
DarkCorner pos control
CUST_16152_PI431796951 ENSORLG00000006874 CSNK2B (1 of many) CSNK2B FALSE ENSORLT00000008638.1 ens|ENSORLT00000008638.1
CUST_3370_PI431796951 ENSORLG00000001490 spry4 spry4 FALSE ENSORLT00000001844.1 ens|ENSORLT00000001844.1
CUST_48811_PI431796951 ENSORLG00000020723 dpysl4 dpysl4 FALSE ENSORLT00000025670.1 ens|ENSORLT00000025670.1
CUST_10618_PI431796951 ENSORLG00000004547 VAT1 (1 of many) VAT1 FALSE ENSORLT00000005717.1 ens|ENSORLT00000005717.1
CUST_24299_PI431796951 ENSORLG00000010344 FALSE ENSORLT00000012963.1 ens|ENSORLT00000012963.1
CUST_36301_PI431796951 ENSORLG00000015200 FALSE ENSORLT00000019044.1 ens|ENSORLT00000019044.1
CUST_27347_PI431796951 ENSORLG00000011618 katnal1 katnal1 FALSE ENSORLT00000014571.1 ens|ENSORLT00000014571.1
CUST_19893_PI431796951 ENSORLG00000008445 pus3 pus3 FALSE ENSORLT00000010608.1 ens|ENSORLT00000010608.1
CUST_45856_PI431796951 ENSORLG00000019228 ldhd ldhd FALSE ENSORLT00000023959.1 ens|ENSORLT00000023959.1
CUST_10410_PI431796951 ENSORLG00000004461 slc12a7b slc12a7b FALSE ENSORLT00000005606.1 ens|ENSORLT00000005606.1
CUST_34570_PI431796951 ENSORLG00000014491 FALSE ENSORLT00000018163.1 ens|ENSORLT00000018163.1
CUST_593_PI431796951 ENSORLG00000000276 FALSE ENSORLT00000000337.1 ens|ENSORLT00000000337.1
CUST_25429_PI431796951 ENSORLG00000010814 hsd17b7 (1 of many) hsd17b7 FALSE ENSORLT00000013566.1 ens|ENSORLT00000013566.1
CUST_44573_PI431796951 ENSORLG00000018535 FALSE ENSORLT00000023181.1 ens|ENSORLT00000023181.1
CUST_31758_PI431796951 ENSORLG00000013368 FALSE ENSORLT00000016760.1 ens|ENSORLT00000016760.1
CUST_40093_PI431796951 ENSORLG00000016722 ACVR1 ACVR1 FALSE ENSORLT00000020918.1 ens|ENSORLT00000020918.1
CUST_34327_PI431796951 ENSORLG00000014388 MANEAL (1 of many) MANEAL FALSE ENSORLT00000018036.1 ens|ENSORLT00000018036.1
CUST_35677_PI431796951 ENSORLG00000014940 htr1b htr1b FALSE ENSORLT00000018730.1 ens|ENSORLT00000018730.1

Total number of rows: 49324

Table truncated, full table size 5130 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL24100_082421_D_GEO_20160303.txt.gz 2.5 Mb (ftp)(http) TXT

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