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Platform GPL27746 Query DataSets for GPL27746
Status Public on Nov 14, 2019
Title Agilent-045986 Salmonella Typhimurium LT2
Technology type in situ oligonucleotide
Distribution commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16045986 or 2545986.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 13, 2019
Last update date Nov 14, 2019
Contact name Cunkuan Shen
E-mail(s) sck12341@gmail.com
Phone 09013614282
Organization name kyushu university
Street address Motooka
City fukuoka nishi ward
State/province fukuoka
ZIP/Postal code 8190385
Country Japan
 
Samples (9) GSM4159092, GSM4159093, GSM4159094, GSM4159095, GSM4159096, GSM4159097 
Series (1)
GSE140300 Transcriptional changes involved in inhibition of biofilm formation by ε-Polylysine in Salmonella Typhimurium

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING DESCRIPTION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_3090_PI428749606 CUST_3090_PI428749606 FALSE yqjI lcl|NC_003197.1_cdsid_NP_462129.1 transcriptional regulator TGGTGTGATCTACCCTACGCTGGATTTTTTACAGGATCAGCAATTTATCACGATTAGCGA
5 96 156 CUST_1783_PI428749606 CUST_1783_PI428749606 FALSE proQ lcl|NC_003197.1_cdsid_NP_460802.1 solute/DNA competence effector CCGTATTAGAAATCACCAAAGATGGTGTCCGTGTACAGCTGAATTCGGGTATGTCTTTGA
6 96 154 CUST_2636_PI428749606 CUST_2636_PI428749606 FALSE STM2744 lcl|NC_003197.1_cdsid_NP_461671.1 hypothetical protein CAGTTTCTGGCGATGAGTGAATCATCGGTTTACCGCCTGATTAAAGACACCGACTTTC
7 96 152 CUST_51_PI428749606 CUST_51_PI428749606 FALSE rihC lcl|NC_003197.1_cdsid_NP_459056.1 ribonucleoside hydrolase RihC CTGCAACTAATAACCACCGTCGCAGGTAATGTTTCCGTTGAAAAAACGACCCGTAATG
8 96 150 CUST_1582_PI428749606 CUST_1582_PI428749606 FALSE STM1638 lcl|NC_003197.1_cdsid_NP_460597.1 SAM-dependent methyltransferase TCGATTCCGTTTCGATGTACTATCTTCTGCACTGCTTACCTGGTGAGATGACAACAAAAG
9 96 148 CUST_2160_PI428749606 CUST_2160_PI428749606 FALSE sspH2 lcl|NC_003197.1_cdsid_NP_461184.1 hypothetical protein TTTTTTGCACCAGATGAAGAACGTACAGCTGGTACATAATGCAGAAAAAGGGCAATACGA
10 96 146 CUST_3824_PI428749606 CUST_3824_PI428749606 FALSE mobA lcl|NC_003197.1_cdsid_NP_462874.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA CCACAACTTGCTACGGTCGTCATTAGTGCTAATCGCCATCTGGATATCTACCAGG
11 96 144 CUST_1946_PI428749606 CUST_1946_PI428749606 FALSE cbiK lcl|NC_003197.1_cdsid_NP_460970.1 vitamin B12 biosynthetic protein GAATATGAAAAAATTGTCCGTGAAGTACAACTCTTGCGTCCGTTATTCACTCGCCTGACG
12 96 142 CUST_3205_PI428749606 CUST_3205_PI428749606 FALSE STM3334 lcl|NC_003197.1_cdsid_NP_462244.1 cytosine deaminase GGTATGGGCAAATCAACGACGGGTTAAATCTGATCACTATCCACAGCGCAAAAACTTTG
13 96 140 CUST_4104_PI428749606 CUST_4104_PI428749606 FALSE proP lcl|NC_003197.1_cdsid_NP_463155.1 proline/glycine betaine transporter CATTACGATAATATTGAGCAGAAAATCGACGACATCGATCAGGAAATTGCGGAGCTGCAG
14 96 138 CUST_3658_PI428749606 CUST_3658_PI428749606 FALSE dsdC lcl|NC_003197.1_cdsid_NP_462701.1 DNA-binding transcriptional regulator DsdC AATCGTCGCTGGATACGTTGAATCAGGAAATCCTCGATATCAAAAATCAGGAACTGTCCG
15 96 136 CUST_2971_PI428749606 CUST_2971_PI428749606 FALSE yggJ lcl|NC_003197.1_cdsid_NP_462010.2 16S ribosomal RNA methyltransferase RsmE GGAATTTACTATCCAGAAATCGATCGAACTGGGTGTAAGCCTCATTACGCCACTGTTCTC
16 96 134 CUST_2122_PI428749606 CUST_2122_PI428749606 FALSE yeiH lcl|NC_003197.1_cdsid_NP_461147.1 inner membrane protein GCGGAAAAAAGCAAAATTACCATTCCGTGGTTTGCTATTTTCTTCATCGTAGTGGCGATC
17 96 132 CUST_1136_PI428749606 CUST_1136_PI428749606 FALSE flgE lcl|NC_003197.1_cdsid_NP_460148.1 flagellar hook protein FlgE ATGCCCATGACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCCGTGTACA
18 96 130 CUST_629_PI428749606 CUST_629_PI428749606 FALSE STM0650 lcl|NC_003197.1_cdsid_NP_459642.1 hydrolas CAATATTGATATTGATGTGTCCGCCATTATGTCTGGCGAGGCTTCTATTACGCAAATGGG
19 96 128 CUST_2620_PI428749606 CUST_2620_PI428749606 FALSE STM2729 lcl|NC_003197.1_cdsid_NP_461656.1 hypothetical protein GCCTGGTTAAACCGAAAAGGCGTAAAGACTACAAACAGCGAATTACAGATCATCAGCATC
20 96 126 CUST_519_PI428749606 CUST_519_PI428749606 FALSE lpxH lcl|NC_003197.1_cdsid_NP_459530.1 UDP-2,3-diacylglucosamine hydrolase CATCATGAAGGTTCAATGGTAAAAGTCACGCCGGACAACGTTGAGTTAATCGCCTTC

Total number of rows: 15744

Table truncated, full table size 2842 Kbytes.




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Supplementary file Size Download File type/resource
GPL27746_GEO_045986_D_GEO.txt.gz 777.5 Kb (ftp)(http) TXT

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