NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL29074 Query DataSets for GPL29074
Status Public on Aug 29, 2020
Title Duke/RG_MM_v3
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Agilent Technologies
Manufacture protocol In situ oligosynthesized array with proprietary synthetic sequences that contain transcription factor binding sites and their 1-base variants.
 
 
Submission date Aug 28, 2020
Last update date Aug 29, 2020
Contact name Raluca Gordan
E-mail(s) raluca.gordan@duke.edu
Organization name Duke University
Department Center for Genomic and Computational Biology
Street address 101 Science Dr, CIEMAS 2179
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Samples (6) GSM4751882, GSM4751883, GSM4751884, GSM4751885, GSM4751886, GSM4751887
Series (2)
GSE156375 DNA mismatches reveal conformational penalties in protein-DNA recognition
GSE157065 DNA mismatches reveal conformational penalties in protein-DNA recognition IV

Data table header descriptions
ID
PROBE_ID Probe ID
NAME Probe name
SEQUENCE Probe sequence

Data table
ID PROBE_ID NAME SEQUENCE
1 Ctrl_MM3_000001 MM2nd_1_WT_r1 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
2 Ctrl_MM3_000002 MM2nd_1_WT_r10 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
3 Ctrl_MM3_000003 MM2nd_1_WT_r11 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
4 Ctrl_MM3_000004 MM2nd_1_WT_r12 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
5 Ctrl_MM3_000005 MM2nd_1_WT_r13 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
6 Ctrl_MM3_000006 MM2nd_1_WT_r14 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
7 Ctrl_MM3_000007 MM2nd_1_WT_r15 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
8 Ctrl_MM3_000008 MM2nd_1_WT_r16 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
9 Ctrl_MM3_000009 MM2nd_1_WT_r17 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
10 Ctrl_MM3_000010 MM2nd_1_WT_r18 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
11 Ctrl_MM3_000011 MM2nd_1_WT_r19 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
12 Ctrl_MM3_000012 MM2nd_1_WT_r2 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
13 Ctrl_MM3_000013 MM2nd_1_WT_r20 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
14 Ctrl_MM3_000014 MM2nd_1_WT_r3 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
15 Ctrl_MM3_000015 MM2nd_1_WT_r4 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
16 Ctrl_MM3_000016 MM2nd_1_WT_r5 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
17 Ctrl_MM3_000017 MM2nd_1_WT_r6 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
18 Ctrl_MM3_000018 MM2nd_1_WT_r7 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
19 Ctrl_MM3_000019 MM2nd_1_WT_r8 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG
20 Ctrl_MM3_000020 MM2nd_1_WT_r9 ACACACATGAGATATCTGATGCCTTCCGTGTGGTTAGCCAGGTGTAGTTTGGTCGTAGTG

Total number of rows: 15100

Table truncated, full table size 1559 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap