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Status |
Public on Apr 15, 2004 |
Title |
SHCO |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Homo sapiens |
|
|
Description |
Tip Configuration: Standard 48 tip Columns per Sector: 30 Rows per Sector: 30 Column Spacing: 146 Row Spacing: 146
|
|
|
Submission date |
May 07, 2003 |
Last update date |
Apr 09, 2008 |
Contact name |
Jonathan Pollack |
E-mail(s) |
pollack1@stanford.edu
|
Phone |
650-736-1987
|
Organization name |
Stanford University
|
Department |
Pathology
|
Lab |
Pollack Lab
|
Street address |
269 Campus Drive, CCSR3245A
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5176 |
Country |
USA |
|
|
Samples (26)
|
GSM6228, GSM6229, GSM6230, GSM6231, GSM6232, GSM6233
GSM6234, GSM6235, GSM6236, GSM6237, GSM6238, GSM6239, GSM6240, GSM6241, GSM6242, GSM6243, GSM6244, GSM6245, GSM6246, GSM6247, GSM6248, GSM6249, GSM6250, GSM6251, GSM6252, GSM6253
|
Series (1) |
GSE425 |
Acute myeloid leukemia study |
|
Data table header descriptions |
ID |
unique spot identifier |
NAME |
name of spot |
GENE_SYM |
gene symbol |
GENE_NAME |
gene name, description |
UNIGENE |
NCBI UniGene cluster identifier |
CLONE_ID |
cDNA clone identifier |
GB_ACC |
GenBank accession number |
SPOT_ID |
|
PREFERRED_NAME |
preferred gene name |
GENE |
Entrez GENE ID |
SUID |
Stanford unique identifier |
SECTOR |
spot sector grid coordinate |
SECTORROW |
spot row grid coordinate |
SECTORCOL |
spot column grid coordinate |
SOURCE |
source |
PLATEID |
clone plate identifier |
PROW |
clone plate row |
PCOL |
clone plate column |
FAILED |
did PCR fail, 0 means one distinct band - success |
IS_VERIFIED |
is verified, default no (N) |
IS_CONTAMINATED |
is contaminated, default unknown (U) |
Data table |
ID |
NAME |
GENE_SYM |
GENE_NAME |
UNIGENE |
CLONE_ID |
GB_ACC |
SPOT_ID |
PREFERRED_NAME |
GENE |
SUID |
SECTOR |
SECTORROW |
SECTORCOL |
SOURCE |
PLATEID |
PROW |
PCOL |
FAILED |
IS_VERIFIED |
IS_CONTAMINATED |
1 |
18939 |
WT1 |
Wilms tumor 1 |
1145 |
IMAGE:503338 |
AA130187 |
|
|
7490 |
1 |
1 |
1 |
rgsv;[(384:gf200sv16prt1230_Cd1),(96:gf201sv86b1)] |
1 |
D |
1 |
0 |
N |
U |
508173 |
2 |
18951 |
UNG2 |
uracil-DNA glycosylase 2 |
3041 |
IMAGE:769600 |
AA425900 |
|
|
10309 |
1 |
1 |
2 |
rgsv;[(384:gf200sv16prt1230_Cd13),(96:gf201sv86b7)] |
1 |
D |
13 |
0 |
N |
U |
508179 |
3 |
19034 |
TIMP3 |
tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory) |
245188 |
IMAGE:489519 |
AA099153 |
|
|
7078 |
1 |
1 |
3 |
rgsv;[(384:gf200sv16prt1230_Ch1),(96:gf201sv86d1)] |
1 |
H |
1 |
0 |
N |
U |
508197 |
4 |
19046 |
TEGT |
testis enhanced gene transcript (BAX inhibitor 1) |
74637 |
IMAGE:884766 |
AA629591 |
|
|
7009 |
1 |
1 |
4 |
rgsv;[(384:gf200sv16prt1230_Ch13),(96:gf201sv86d7)] |
1 |
H |
13 |
0 |
N |
U |
508203 |
5 |
19130 |
SMPD1 |
sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase) |
77813 |
IMAGE:729964 |
AA416890 |
|
|
6609 |
1 |
1 |
5 |
rgsv;[(384:gf200sv16prt1230_Cl1),(96:gf201sv86f1)] |
1 |
L |
1 |
0 |
N |
U |
508221 |
6 |
19142 |
SLC6A1 |
solute carrier family 6 (neurotransmitter transporter, GABA), member 1 |
22003 |
IMAGE:177967 |
H46254 |
|
|
6529 |
1 |
1 |
6 |
rgsv;[(384:gf200sv16prt1230_Cl13),(96:gf201sv86f7)] |
1 |
L |
13 |
0 |
N |
U |
508227 |
7 |
19226 |
S100A8 |
S100 calcium binding protein A8 (calgranulin A) |
416073 |
IMAGE:562729 |
AA086471 |
|
|
6279 |
1 |
1 |
7 |
rgsv;[(384:gf200sv16prt1230_Cp1),(96:gf201sv86h1)] |
1 |
P |
1 |
0 |
N |
U |
508245 |
8 |
19238 |
RPL36AL |
ribosomal protein L36a-like |
419465 |
IMAGE:884842 |
AA669359 |
|
|
6166 |
1 |
1 |
8 |
rgsv;[(384:gf200sv16prt1230_Cp13),(96:gf201sv86h7)] |
1 |
P |
13 |
0 |
N |
U |
508251 |
9 |
19682 |
COPEB |
core promoter element binding protein |
285313 |
IMAGE:510381 |
AA055584 |
|
CPBP=CBA1=DNA-binding protein |
1316 |
1 |
1 |
9 |
rgsv;[(384:gf201sv89prt1231_Cd1),(96:gf201sv92b1)] |
2 |
D |
1 |
2 |
N |
U |
508749 |
10 |
19694 |
CX3CL1 |
chemokine (C-X3-C motif) ligand 1 |
80420 |
IMAGE:140574 |
R66139 |
|
CX3C chemokine=orthologue of mouse fractalkine |
6376 |
1 |
1 |
10 |
rgsv;[(384:gf201sv89prt1231_Cd13),(96:gf201sv92b7)] |
2 |
D |
13 |
0 |
N |
U |
508755 |
11 |
19778 |
PIP5K1A |
phosphatidylinositol-4-phosphate 5-kinase, type I, alpha |
149255 |
IMAGE:293950 |
N64014 |
|
|
8394 |
1 |
1 |
11 |
rgsv;[(384:gf201sv89prt1231_Ch1),(96:gf201sv92d1)] |
2 |
H |
1 |
0 |
N |
U |
508773 |
12 |
19790 |
PPP1R8 |
protein phosphatase 1, regulatory (inhibitor) subunit 8 |
356590 |
IMAGE:278650 |
N66208 |
|
|
5511 |
1 |
1 |
12 |
rgsv;[(384:gf201sv89prt1231_Ch13),(96:gf201sv92d7)] |
2 |
H |
13 |
0 |
N |
U |
508779 |
13 |
19873 |
STK12 |
serine/threonine kinase 12 |
180655 |
IMAGE:531319 |
AA071235 |
|
|
9212 |
1 |
1 |
13 |
rgsv;[(384:gf201sv89prt1231_Cl1),(96:gf201sv92f1)] |
2 |
L |
1 |
2 |
N |
U |
508797 |
14 |
19885 |
ENPP3 |
ectonucleotide pyrophosphatase/phosphodiesterase 3 |
264750 |
IMAGE:430968 |
AA678335 |
|
|
5169 |
1 |
1 |
14 |
rgsv;[(384:gf201sv89prt1231_Cl13),(96:gf201sv92f7)] |
2 |
L |
13 |
0 |
N |
U |
508803 |
15 |
19969 |
SDHD |
succinate dehydrogenase complex, subunit D, integral membrane protein |
168289 |
IMAGE:471598 |
AA035383 |
|
|
6392 |
1 |
1 |
15 |
rgsv;[(384:gf201sv89prt1231_Cp1),(96:gf201sv92h1)] |
2 |
P |
1 |
2 |
N |
U |
508821 |
16 |
19980 |
KL |
klotho |
94592 |
IMAGE:897271 |
AA677655 |
|
|
9365 |
1 |
1 |
16 |
rgsv;[(384:gf201sv89prt1231_Cp13),(96:gf201sv92h7)] |
2 |
P |
13 |
2 |
N |
U |
508827 |
17 |
120837 |
SETBP1 |
SET binding protein 1 |
151717 |
IMAGE:1562231 |
AA953508 |
|
|
26040 |
1 |
1 |
17 |
rgsv;[(384:gf201sv97prt1232_Cd1),(96:gf204sv220b1)] |
3 |
D |
1 |
0 |
N |
U |
521037 |
18 |
120848 |
CCL1 |
chemokine (C-C motif) ligand 1 |
72918 |
IMAGE:1570420 |
AA931884 |
|
|
6346 |
1 |
1 |
18 |
rgsv;[(384:gf201sv97prt1232_Cd13),(96:gf204sv220b7)] |
3 |
D |
13 |
0 |
N |
U |
521043 |
19 |
120904 |
KIAA0241 |
KIAA0241 protein |
150275 |
IMAGE:1584287 |
AA971406 |
|
|
23080 |
1 |
1 |
19 |
rgsv;[(384:gf201sv97prt1232_Ch1),(96:gf204sv220d1)] |
3 |
H |
1 |
0 |
N |
U |
521061 |
20 |
120916 |
MECP2 |
methyl CpG binding protein 2 (Rett syndrome) |
3239 |
IMAGE:1587248 |
AA977094 |
|
|
4204 |
1 |
1 |
20 |
rgsv;[(384:gf201sv97prt1232_Ch13),(96:gf204sv220d7)] |
3 |
H |
13 |
0 |
N |
U |
521067 |
Total number of rows: 43008
Table truncated, full table size 6903 Kbytes.
Supplementary data files not provided |
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