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Platform GPL3497 Query DataSets for GPL3497
Status Public on Mar 03, 2006
Title NimbleGen hg17 Human 1.5 Kb MinPromoter array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol oligos fabricated on array
 
Description Average of 15 probes/promoter. Most promoters have 15 probes, but in particular, some bidirectional promoters have ~30. Note that spacing and overlap of probes is highly variable.
 
Contributor(s) Bieda MC, Xu S, Farnham P, Green R
Submission date Feb 27, 2006
Last update date Mar 03, 2006
Contact name Mark Bieda
E-mail(s) markb7002000@yahoo.com
Organization name University of Calgary
Department Biochemistry and Molecular Biology
Lab Bieda
Street address 3330 Hospital Dr NW
City Calgary
State/province AB
ZIP/Postal code T2N4N1
Country Canada
 
Samples (24) GSM98590, GSM98714, GSM154827, GSM154828, GSM154830, GSM154834 
Series (5)
GSE4319 HeLa E2F1 ChIP on 24,000 Promoters
GSE4415 Characterization of E2F1 in HeLa and MCF7 cells
GSE6715 DNA methylation, RNA Pol2 binding and H3-K4me2 of human promoters in WI38 primary fibroblasts and sperm cells

Data table header descriptions
ID
GENOME_ACC GenBank chromosome identifier (hg17)
RANGE_START startpoint in genbank chromosome
RANGE_END endpoint in genbank chromosome
RANGE_STRAND always plus
CHROMOSOME chromsome number
NG_PROMOTER NimbleGen internal promoter name within this array
GB_RANGE Accession.version[start..end]
SPOT_ID spot identifier

Data table
ID GENOME_ACC RANGE_START RANGE_END RANGE_STRAND CHROMOSOME NG_PROMOTER GB_RANGE SPOT_ID
CHR1P000009637_HSAP0406S00000003 NC_000001.8 9637 9686 + chr1 HSAP0406S00000003 NC_000001.8[9637..9686]
CHR1P000008427_HSAP0406S00000003 NC_000001.8 8427 8476 + chr1 HSAP0406S00000003 NC_000001.8[8427..8476]
CHR1P000008707_HSAP0406S00000003 NC_000001.8 8707 8756 + chr1 HSAP0406S00000003 NC_000001.8[8707..8756]
CHR1P000009597_HSAP0406S00000003 NC_000001.8 9597 9646 + chr1 HSAP0406S00000003 NC_000001.8[9597..9646]
CHR1P000009757_HSAP0406S00000003 NC_000001.8 9757 9806 + chr1 HSAP0406S00000003 NC_000001.8[9757..9806]
CHR1P000009607_HSAP0406S00000003 NC_000001.8 9607 9656 + chr1 HSAP0406S00000003 NC_000001.8[9607..9656]
CHR1P000009097_HSAP0406S00000003 NC_000001.8 9097 9146 + chr1 HSAP0406S00000003 NC_000001.8[9097..9146]
CHR1P000008677_HSAP0406S00000003 NC_000001.8 8677 8726 + chr1 HSAP0406S00000003 NC_000001.8[8677..8726]
CHR1P000009617_HSAP0406S00000003 NC_000001.8 9617 9666 + chr1 HSAP0406S00000003 NC_000001.8[9617..9666]
CHR1P000008697_HSAP0406S00000003 NC_000001.8 8697 8746 + chr1 HSAP0406S00000003 NC_000001.8[8697..8746]
CHR1P000009627_HSAP0406S00000003 NC_000001.8 9627 9676 + chr1 HSAP0406S00000003 NC_000001.8[9627..9676]
CHR1P000009087_HSAP0406S00000003 NC_000001.8 9087 9136 + chr1 HSAP0406S00000003 NC_000001.8[9087..9136]
CHR1P000008687_HSAP0406S00000003 NC_000001.8 8687 8736 + chr1 HSAP0406S00000003 NC_000001.8[8687..8736]
CHR1P000009437_HSAP0406S00000003 NC_000001.8 9437 9486 + chr1 HSAP0406S00000003 NC_000001.8[9437..9486]
CHR1P000008667_HSAP0406S00000003 NC_000001.8 8667 8716 + chr1 HSAP0406S00000003 NC_000001.8[8667..8716]
CHR1P000019401_HSAP0406S00000005 NC_000001.8 19401 19450 + chr1 HSAP0406S00000005 NC_000001.8[19401..19450]
CHR1P000019281_HSAP0406S00000005 NC_000001.8 19281 19330 + chr1 HSAP0406S00000005 NC_000001.8[19281..19330]
CHR1P000019421_HSAP0406S00000005 NC_000001.8 19421 19470 + chr1 HSAP0406S00000005 NC_000001.8[19421..19470]
CHR1P000019241_HSAP0406S00000005 NC_000001.8 19241 19290 + chr1 HSAP0406S00000005 NC_000001.8[19241..19290]
CHR1P000019261_HSAP0406S00000005 NC_000001.8 19261 19310 + chr1 HSAP0406S00000005 NC_000001.8[19261..19310]

Total number of rows: 359384

Table truncated, full table size 43193 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary data files not provided
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