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Platform GPL3612 Query DataSets for GPL3612
Status Public on Apr 04, 2006
Title Institute of Food Research Salmonella typhimurium LT2 5.8K array
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Manufacturer Institute of Food Research, Norwich, UK
Manufacture protocol PCR product array of whole ORF's from S. Typhimurium LT2. For description of PCR amplification and printing procedures see Eriksson et al., Molecular Microbiology(2003) 47(1): 103-118.
Support glass
Coating aminosilane
 
 
Web link http://www.ifr.ac.uk/safety/Microarrays/default.html
Contributor(s) Thompson A, Lucchini S, Hinton J
Citation(s) 12492857
Submission date Mar 31, 2006
Last update date Apr 05, 2006
Contact name Arthur Thompson
E-mail(s) arthur.thompson@bbsrc.ac.uk
Phone +44 1603255181
Fax +44 1603 255288
Organization name Institute of Food Research
Department Food Safety Science
Street address Colney Lane
City Norwich
State/province Norfolk
ZIP/Postal code NR4 7UA
Country United Kingdom
 
Samples (24) GSM103442, GSM103443, GSM103444, GSM103445, GSM103446, GSM103447 
Series (1)
GSE4631 Effect of ppGpp on Salmonella Typhimurium gene expression

Data table header descriptions
ID
GENE SYMBOL Common name of gene
SPOT ID
GB ACC
GB RANGE
GENE_PRODUCT Function of gene product
ORF
SPOT_ID STM number

Data table
ID GENE SYMBOL SPOT ID GB ACC GB RANGE GENE_PRODUCT ORF SPOT_ID
1 yiiD STM4029 AAL22868 4238645..4239634 putative acetyltransferase STM4029
2 yjiY STM4532 AAL23350 4787565..4789715 putative carbon starvation protein STM4532
3 glpG STM3524 AAL22385 3687300..3688130 protein of glp regulon STM3524
4 yhjC STM3607 AAL22467 3780701..3781600 putative transcriptional regulator, LysR family STM3607
5 dacB STM3300 AAL22170 3468654..3470087 D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 4 STM3300
6 yqjD STM3229 AAL22102 3396798..3397103 putative inner membrane protein STM3229
7 yfhP STM2544 AAL21438 2682931..2683425 believed to be involved in assembly of Fe-S clusters STM2544
8 STM0660 AAL19611 724288..725526 putative cytoplasmic protein STM0660
9 STM0672 AAL19623 737297..737872 putative inner membrane protein STM0672
10 nagB STM0684 AAL19628 744131..744931 glucosamine-6-phosphate deaminase STM0684
11 ybfN STM0688 AAL19632 750990..751322 putative lipoprotein STM0688
12 eutH STM2460 AAL21354 2570024..2571250 putative transport protein, ethanolamine utilization STM2460
13 ubiE STM3970 AAL22814 4177291..4178046 S-adenosylmethionine : 2-DMK methyltransferase and 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase STM3970
14 STM3966 AAL22810 4172370..4173713 putative arylsulfatase regulator STM3966
15 yigL STM3962 AAL22806 4166892..4167692 putative hydrolase of the HAD superfamily STM3962
16 recQ STM3958 AAL22802 4162558..4164405 ATP-dependent DNA helicase STM3958
17 yigG STM3954 AAL22798 4159570..4160028 putative inner membrane protein STM3954
18 yigB STM3950 AAL22794 4154689..4155405 putative hydrolase of the HAD superfamily STM3950
19 sgaB STM4384 AAL23204 4626646..4626951 putative PTS enzyme IIsga subunit STM4384
20 cycA STM4398 AAL23218 4634848..4636257 APC family, D-alanine/D-serine/glycine transport protein STM4398

Total number of rows: 5376

Table truncated, full table size 465 Kbytes.






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Supplementary data files not provided
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