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Status
Public on Oct 12, 2007
Title
UCSF HumArray 2.0
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
UCSF Comprehensive Cancer Center Array Core
Manufacture protocol
http://cancer.ucsf.edu/array Support
other
Coating
other
Description
The arrays contain 2464 BAC clones printed as triplicate spots and are described in: Snijders AM, Nowak N, Segraves R, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics 2001; 29:263-264.
Web link
http://cancer.ucsf.edu/array Citation(s)
11687795 Submission date
Oct 12, 2006
Last update date
Oct 12, 2007
Contact name
Donna G Albertson
E-mail(s)
albertson@ucsf.edu Phone
415-502-8463
Organization name
University of California San Francisco
Department
Comprihensive Cancer Center
Street address
Box 0808
City
San Francisco
State/province
CA
ZIP/Postal code
94143-0808
Country
USA
Samples (20)
GSM1049003 , GSM1049004 , GSM1049005 , GSM1049006 , GSM1049007 , GSM1049008
GSM1049009 ,
GSM1049010 ,
GSM1049011 ,
GSM1049012 ,
GSM1049013 ,
GSM1049014 ,
GSM1049015 ,
GSM1049016 ,
GSM1049017 ,
GSM1049018 ,
GSM1049019 ,
GSM1049020 ,
GSM1049021 ,
GSM1049022 Series (2)
GSE42739 Chromosomal changes in primary human uveal melanomas [UCSF]
GSE42740 Chromosomal changes in primary human uveal melanomas
Data table header descriptions ID CLONE_ID Clone identifier
SRC_PLATE_POS Source plate position
CHROMOSOME Chromosome
BP_POSITION Genomic position in bp on May 2004 freeze of UCSC human genome sequence
MARKER_NAMES Sequence assignment
FISH FISH mapping
SUBARRAY_ROW Subarray row
SUBARRAY_COL Subarray column
SPOT_ROW Spot row
SPOT_COL Spot column
Data table ID CLONE_ID SRC_PLATE_POS CHROMOSOME BP_POSITION MARKER_NAMES FISH SUBARRAY_ROW SUBARRAY_COL SPOT_ROW SPOT_COL 1
GS1-232B23 HumArray2H11_N30
1
1
1 p tel
1 p tel;
2
2
21
7
2
RP11-82D16 HumArray2H11_C9
1
2171400
AFM214YG7;D1S243
1p36;
3
1
16
16
3
RP11-62M23 HumArray2H10_N30
1
3608018
AFM280WE5;D1S468
1p36;
2
2
13
13
4
RP11-111O5 HumArray2H10_B18
1
4502019
AFM123XC3;D1S2893
1p36;
2
2
9
7
5
RP11-51B4 HumArray2H10_Q30
1
6293700
AFM254WB9;D1S253
1p36.3;
1
2
14
19
6
RP11-60J11 HumArray2H10_T30
1
7041726
AFMA210XG9;D1S2663
1p36.2;
4
2
14
19
7
RP11-813J5 HumArray2H10_B19
1
9722955
A006Z42;p110D
1p36.2;
2
3
9
7
8
RP11-199O1 HumArray2H10_W30
1
10508329
AFM220YF4;D1S244
1p36.3;
3
2
16
4
9
RP11-188F7 HumArray2H9_C14
1
12266459
AFM217YH8;D1S434
1p36;
3
2
1
10
10
RP11-178M15 HumArray2H9_F14
1
13731634
AFM196XB4;D1S228
1p36.2-.3;
2
2
2
16
11
RP11-219F4 HumArray2H9_I14
1
14774025
AFMA127ZC9;D1S507
1p36.2-.3;
1
2
4
1
12
RP11-265F14 HumArray2H9_A23
1
15503411
AFM217ZC3
1p36;
1
3
1
16
13
RP11-145C4 HumArray2H9_L14
1
18771772
AFMA153XE9
1p36;
4
2
4
1
14
RP11-224F8 HumArray2H9_O14
1
20255686
AFM343ZA9;D1S2843
1p36.1;
3
2
5
7
15
CTD-2128D14 HumArray2H11_L8
1
21668125
M64788;RAP1GA1
1p35-1p36.1;
4
4
19
4
16
RP11-139H5 HumArray2H9_B4
1
22238872
AFM193XB12
1p36.1
2
4
1
1
17
CTD-2194B23 HumArray2H10_E19
1
22985369
D1S3214;EPHB2
1p36.2
1
3
10
13
18
RP11-72I19 HumArray2H9_U14
1
23109720
AFM113XC7
1p35-36
1
2
7
19
19
RP11-57F20 HumArray2H9_R14
1
23544768
AFM294ZD1;D1S482
1p36.1
2
2
6
13
20
RP11-285H13 HumArray2H9_X14
1
26979869
AFMB291WB5;D1S2749
1p35
4
2
7
19
2464 182 Kbytes .Supplementary data files not provided
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