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Status
Public on Oct 08, 2007
Title
UCSF HumArray 3.1
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
UCSF Comprehensive Cancer Center Array Core
Manufacture protocol
http://cancer.ucsf.edu/array Support
other
Coating
other
Description
The arrays contain 2464 BAC clones printed as triplicate spots and are described in: Snijders AM, Nowak N, Segraves R, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics 2001; 29:263-264.
Web link
http://cancer.ucsf.edu/array Citation(s)
11687795 Submission date
Oct 12, 2006
Last update date
Oct 08, 2007
Contact name
Donna G Albertson
E-mail(s)
albertson@ucsf.edu Phone
415-502-8463
Organization name
University of California San Francisco
Department
Comprihensive Cancer Center
Street address
Box 0808
City
San Francisco
State/province
CA
ZIP/Postal code
94143-0808
Country
USA
Samples (161)
GSM143696 , GSM143852 , GSM143854 , GSM143856 , GSM143857 , GSM143859
GSM143862 ,
GSM143863 ,
GSM143864 ,
GSM143865 ,
GSM143866 ,
GSM143867 ,
GSM143868 ,
GSM143869 ,
GSM143870 ,
GSM143871 ,
GSM143872 ,
GSM143873 ,
GSM143874 ,
GSM143875 ,
GSM143876 ,
GSM143877 ,
GSM143878 ,
GSM143879 ,
GSM143880 ,
GSM143881 ,
GSM143882 ,
GSM143883 ,
GSM143884 ,
GSM143885 ,
GSM143887 ,
GSM143888 ,
GSM143889 ,
GSM143890 ,
GSM143892 ,
GSM143894 ,
GSM144064 ,
GSM144065 ,
GSM144066 ,
GSM144067 ,
GSM144068 ,
GSM144069 ,
GSM144070 ,
GSM144071 ,
GSM144072 ,
GSM144073 ,
GSM144074 ,
GSM144075 ,
GSM144076 ,
GSM144077 ,
GSM144078 ,
GSM144079 ,
GSM144080 ,
GSM144083 ,
GSM144085 ,
GSM144086 ,
GSM144092 ,
GSM144093 ,
GSM144094 ,
GSM144095 ,
GSM144096 ,
GSM144104 ,
GSM144109 ,
GSM144110 ,
GSM144111 ,
GSM144112 ,
GSM144113 ,
GSM144114 ,
GSM144115 ,
GSM144116 ,
GSM144117 ,
GSM144118 ,
GSM144119 ,
GSM144120 ,
GSM144175 ,
GSM144176 ,
GSM144177 ,
GSM144178 ,
GSM144179 ,
GSM144181 ,
GSM144182 ,
GSM144183 ,
GSM144184 ,
GSM144185 ,
GSM144186 ,
GSM144187 ,
GSM144188 ,
GSM144189 ,
GSM144190 ,
GSM144193 ,
GSM144194 ,
GSM144196 ,
GSM144198 ,
GSM144199 ,
GSM144200 ,
GSM702177 ,
GSM702178 ,
GSM1481347 ,
GSM1481348 ,
GSM1481349 ,
GSM1481350 ,
GSM1481351 ,
GSM1481352 ,
GSM1481353 ,
GSM1481354 ,
GSM1481355 ,
GSM1481356 ,
GSM1481357 ,
GSM1481358 ,
GSM1481359 ,
GSM1481360 ,
GSM1481361 ,
GSM1481362 ,
GSM1481363 ,
GSM1481364 ,
GSM1481365 ,
GSM1481366 ,
GSM1481367 ,
GSM1481368 ,
GSM1481369 ,
GSM1481370 ,
GSM1481371 ,
GSM1481372 ,
GSM1481373 ,
GSM1481374 ,
GSM1481375 ,
GSM1481376 ,
GSM1481377 ,
GSM1481378 ,
GSM1481379 ,
GSM1481380 ,
GSM1481381 ,
GSM1481382 ,
GSM1481383 ,
GSM1481384 ,
GSM1481385 ,
GSM1481386 ,
GSM1481387 ,
GSM1481388 ,
GSM1481389 ,
GSM1481390 ,
GSM1481391 ,
GSM1481392 ,
GSM1481393 ,
GSM1481394 ,
GSM1481395 ,
GSM1481396 ,
GSM1481397 ,
GSM1481398 ,
GSM1481399 ,
GSM1481400 ,
GSM1481401 ,
GSM1481402 ,
GSM1481403 ,
GSM1481404 ,
GSM1481405 ,
GSM1481406 ,
GSM1481407 ,
GSM1481408 ,
GSM1481409 ,
GSM1481410 Series (3)
GSE6262 Genome Position and Gene Amplification
GSE28407 Diverse routes to oral cancer differing in genome instability and risk for cervical node metastasis
GSE60507 BAC aCGH profiling of 64 GBM (primary & recurrent)
Data table header descriptions ID CLONE_ID Clone identifier
SRC_PLATE_POS Source plate position
CHROMOSOME Chromosome
BP_POSITION Genomic position in bp on May 2004 freeze of UCSC human genome sequence
MARKER_NAMES Sequence assignment
FISH FISH mapping
SUBARRAY_ROW Subarray row
SUBARRAY_COL Subarray column
SPOT_ROW Spot row
SPOT_COL Spot column
Data table ID CLONE_ID SRC_PLATE_POS CHROMOSOME BP_POSITION MARKER_NAMES FISH SUBARRAY_ROW SUBARRAY_COL SPOT_ROW SPOT_COL 1
GS1-232B23 HA3.1H16_N12
1
1
1 p tel
1 p tel;
2
4
20
13
2
RP11-82D16 HA3.1H15_X16
1
2171400
AFM214YG7;D1S243
1p36;
4
4
15
13
3
RP11-62M23 HA3.1H15_C19
1
3608018
AFM280WE5;D1S468
1p36;
3
3
9
7
4
RP11-111O5 HA3.1H15_F25
1
4502019
AFM123XC3;D1S2893
1p36;
2
1
10
19
5
RP11-51B4 HA3.1H15_F19
1
6293700
AFM254WB9;D1S253
1p36.3;
2
3
10
13
6
RP11-60J11 HA3.1H15_I19
1
7041726
AFMA210XG9;D1S2663
1p36.2;
1
3
11
19
7
RP11-813J5 HA3.1H15_B19
1
9722955
A006Z42;p110D
1p36.2;
2
3
9
7
8
RP11-199O1 HA3.1H15_L19
1
10508329
AFM220YF4;D1S244
1p36.3;
4
3
11
19
9
RP11-188F7 HA3.1H14_C11
1
12266459
AFM217YH8;D1S434
1p36;
3
3
1
7
10
RP11-178M15 HA3.1H14_F11
1
13731634
AFM196XB4;D1S228
1p36.2-.3;
2
3
2
13
11
RP11-219F4 HA3.1H14_I11
1
14774025
AFMA127ZC9;D1S507
1p36.2-.3;
1
3
3
19
12
RP11-265F14 HA3.1H14_A23
1
15503411
AFM217ZC3
1p36;
1
3
1
16
13
RP11-145C4 HA3.1H14_L11
1
18771772
AFMA153XE9
1p36;
4
3
3
19
14
RP11-224F8 HA3.1H14_O11
1
20255686
AFM343ZA9;D1S2843
1p36.1;
3
3
5
4
15
CTD-2128D14 HA3.1H16_T2
1
21668125
M64788;RAP1GA1
1p35-1p36.1;
4
2
21
13
16
RP11-139H5 HA3.1H14_B4
1
22238872
AFM193XB12
1p36.1
2
4
1
1
17
CTD-2194B23 HA3.1H15_E19
1
22985369
D1S3214;EPHB2
1p36.2
1
3
10
13
18
RP11-72I19 HA3.1H14_U11
1
23109720
AFM113XC7
1p35-36
1
3
7
16
19
RP11-57F20 HA3.1H14_R11
1
23544768
AFM294ZD1;D1S482
1p36.1
2
3
6
10
20
RP11-285H13 HA3.1H14_X11
1
26979869
AFMB291WB5;D1S2749
1p35
4
3
7
16
2464 173 Kbytes .Supplementary data files not provided
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