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Platform GPL6903 Query DataSets for GPL6903
Status Public on May 31, 2008
Title CNIO Mouse chip 27.6K 3.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
Manufacturer Genomic Unit, Biotechnology Program, Spanish National Cancer Research Centre
Manufacture protocol 1.- Individual I.M.A.G.E. Consortium [LLNL] clones were grown in 96-well plates at 37°C for 6 hours.
2.- The bacterial cultures were used for PCR amplification.
3.- PCR products were purified by ultrafiltration, verified by agarose gel electrophoresis and quantified by gel image densitometry.
4.- Probe concentrations were adjusted in 50% DMSO at about 100-150 ng/ul.
5.- Probes were printed onto Gamma Amino Silane Coated glass slides (CMT-GAPS Corning) using the spotter Multigrid II (BioRobotics).
6.- After printing, the slides were baked for 4 hours at 80ºC and stored desiccated in the dark, under vacuum and at room temperature.
Support glass
Coating aminosilane
 
 
Submission date May 27, 2008
Last update date May 31, 2008
Contact name Rocio G. Urdinguio
E-mail(s) rgonzalezu@cnio.es
Phone +34-912246900
Fax +34-912246923
Organization name Spanish National Cancer Centre (CNIO)
Department Molecular Pathology Program
Lab Cancer Epigenetics
Street address Melchor Fernandez Almagro 3
City Madrid
State/province Madrid
ZIP/Postal code 28029
Country Spain
 
Samples (12) GSM292051, GSM292052, GSM292053, GSM292069, GSM292070, GSM292082 
Series (1)
GSE11596 Gene expression profiles of wild type and Mecp2-null mice in three different regions of the brain

Data table header descriptions
ID
Block Each subarray from the main array
Row Each row from each subarray
Column Each column from each subarray
CNIO Id CNIO clone number
Clone ID
Gene Name Gene name
UG_ID UniGene cluste clone identifier
GB_ACC GenBank Accession number
SPOT_ID
CE Control Elements

Data table
ID Block Row Column CNIO Id Clone ID Gene Name UG_ID GB_ACC SPOT_ID CE
1 1 1 1 xAA0081 GNOLD43.16 GAPD Data not found AJ844644 Positive human
2 1 1 2 mAA0007 H3001A08 Myo1b Mm.3390 BG062934
3 1 1 3 mAA0205 H3003B02 Myo1b Mm.3390 BG063103
4 1 1 4 mAA0901 H3010D02 Actb Mm.297 BG063688
5 1 1 5 xAA0180 GNOLE160 Data not found Yeast, Spike specific_Cal7.3 Yeast, Spike specific_Cal7.3
6 1 1 6 xAA0182 GNOLE160 Data not found Yeast, Spike specific_Ratio1.3 Yeast, Spike specific_Ratio1.3
7 1 1 7 xAA0188 GNOLE160 Data not found Yeast, Spike specific_Ratio3.4 Yeast, Spike specific_Ratio3.4
8 1 1 8 xAA0193 GNOLE160 Data not found Yeast, Spike specific_Ratio5.5 Yeast, Spike specific_Ratio5.5
9 1 1 9 mAA0101 H3002A06 Lad1 Mm.36726 BG063088
10 1 1 10 mAA0125 H3002C06 Elac2 Mm.157711 BG062943
11 1 1 11 mAA0149 H3002E06 Dbt Mm.3636 BG062963
12 1 1 12 mAA0173 H3002G06 Tceb2 Mm.153758 BG062985
13 1 1 13 mAA0107 H3002A12 Gpatc2 Mm.138321 BG063094
14 1 1 14 mAA0131 H3002C12 Xrn2 Mm.3065 BG062948
15 1 1 15 mAA0155 H3002E12 Aurkb Mm.3488 BG062968
16 1 1 16 mAA0179 H3002G12 Data not found BG062990
17 1 1 17 mAA7781 H3082A06 Mos Mm.317339 BG070036
18 1 1 18 mAA7805 H3082C06 Sc4mol Mm.30119 BG070057
19 1 1 19 mAA7829 H3082E06 Pdlim7 Mm.275648 BG070079
20 1 1 20 mAA7853 H3082G06 Arfip1 Mm.316536 BG069934

Total number of rows: 27648

Table truncated, full table size 1594 Kbytes.




Download family Format
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Supplementary data files not provided
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