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Platform GPL7177 Query DataSets for GPL7177
Status Public on Feb 10, 2009
Title Streptococcus pneumoniae whole genome tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Streptococcus pneumoniae
Manufacturer NimbleGen Systems Inc.
Manufacture protocol Available at manufacturer's website: www.nimblegen.com
Support glass
Coating unknown
 
Description Maskless Array Synthesizer (MAS) technology
 
Web link http://www.nimblegen.com
Contributor(s) Kumar R, Shah P, Swiatlo E, Nanduri B, Burgess SC, Lawrence ML
Submission date Aug 18, 2008
Last update date Feb 10, 2009
Contact name Ranjit Kumar
E-mail(s) rk228@msstate.edu
Phone 6623257706
Organization name MSU
Department Dept of Basic Science
Lab Mark Lawrence
Street address 240 Wise Center Drive,PO Box 6100
City starkville
State/province MS
ZIP/Postal code 39762
Country USA
 
Samples (2) GSM313342, GSM313345
Series (1)
GSE12636 High density Tiling array analysis of Streptococcus pneumoniae TIGR4 genome

Data table header descriptions
ID
SEQ_ID GenBank accession number and Random Sequence Id
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
ROW_NUM Y coordinate of the feature on the array
COL_NUM X coordinate of the feature on the array
POSITION NimbleGen probe start positions
CONTAINER To distinguish sets of probes, either physically or informatically. It also has strand information.
GB_RANGE accession.version[start..end]
SPOT_ID spot identifier

Data table
ID SEQ_ID SEQUENCE ROW_NUM COL_NUM POSITION CONTAINER GB_RANGE SPOT_ID
SPNE00P000001624 NC_003028 TATGACTTGTTTAAAGGCTGTTTTCCACAGATTTCACAGACTCTATTATT 1 1 1624 FORWARD NC_003028.3[1624..1673]
SPNE00P002025774 NC_003028 AGGTAAATCTCTATCTCCTTTCATCCCACTTGTCGACAACGACAATGTTC 1 25 2025774 FORWARD NC_003028.3[2025774..2025823]
SPNE00P000490183 NC_003028 CACTGATAAGTTTTTCTTTTTCAGCTTTAATTCTCTTTAATAATTCACTT 1 27 490183 FORWARD NC_003028.3[490183..490232]
SPNE99P001654506 NC_003028 CAAGGTCATGGCAGAGTTTCATGTTGACAGGAATGTTAGTCGCAGAACTA 1 29 1654506 REVERSE NC_003028.3[1654506..1654555]
SPNE99P000419396 NC_003028 AATCTCAGCTCTCTTCTCAGCTGGCGCTGACATCTTAACCAAAATCACCT 1 31 419396 REVERSE NC_003028.3[419396..419445]
RANDOM00004694 RANDOM_GC12_GC28 AAGAAGAGGTTTACACGCATTGAATTACATTAACCTTAGTAACAATCGGA 1 33 0 RANDOM RANDOM_GC12_GC28
SPNE00P001815341 NC_003028 TGAAAAGGCGGTGTCTTAACCCCTTGACCAACGGACCTGAGTTGTTATTT 1 35 1815341 FORWARD NC_003028.3[1815341..1815390]
SPNE99P002155667 NC_003028 TTCAAGATTAAAAATTAGAAAATTAAAAGATATTTTAGAGAAAAAATCTC 1 37 2155667 REVERSE NC_003028.3[2155667..2155716]
SPNE99P000332429 NC_003028 GGATAAATAGCCTTGACATCTGAATATTCTTCAATAATCCTTCTAATTGC 1 39 332429 REVERSE NC_003028.3[332429..332478]
SPNE99P000782455 NC_003028 AATCGTAATTTGTGCTGACACATCTTTAGGAGATGTTATACGTTTTCACT 1 41 782455 REVERSE NC_003028.3[782455..782504]
RANDOM00002044 RANDOM_GC12_GC28 TCGGTATAAAGTTACGGGACGGCGATCTATTTGGAGGGTGGGTAGATTGA 1 43 0 RANDOM RANDOM_GC12_GC28
SPNE00P001525273 NC_003028 TCTCCTGCAGACAAACGAATGACATCTCCTAGCACTAATTCTTCAGGATT 1 45 1525273 FORWARD NC_003028.3[1525273..1525322]
SPNE00P001456250 NC_003028 CGGGTACTTCAAGCGCAGGTGACGTTTGACATCACGGTTAAAATACTCCG 1 47 1456250 FORWARD NC_003028.3[1456250..1456299]
SPNE00P002091380 NC_003028 CAGCTCCCCCCTGTCCTAAAAGATAAGGACGGTAGGAACGATTGTATTTC 1 49 2091380 FORWARD NC_003028.3[2091380..2091429]
SPNE99P000692668 NC_003028 TTTTCGAGTCTTCTCAACGACTGTATAGCTTCCCTTTTGCATCTTCATGC 1 51 692668 REVERSE NC_003028.3[692668..692717]
SPNE99P000908165 NC_003028 GCTAATTTAAGAATACGTTTACGACGTTTGCGTGATACAACGCCACCTTT 1 53 908165 REVERSE NC_003028.3[908165..908214]
SPNE00P001106923 NC_003028 TCAAAGCCACATCCTCAGCAGCATCAAAATCAAGAAGAGTGTGGTCGAGG 1 55 1106923 FORWARD NC_003028.3[1106923..1106972]
SPNE00P001402452 NC_003028 TTTTATTCTTTACGAAAGACCTCGTTCTCAAAACCAGGAAAAAAGCCCAC 1 165 1402452 FORWARD NC_003028.3[1402452..1402501]
SPNE00P000188683 NC_003028 GAAAAAATTACAATTTTGCCAACTCTCTTCGTCGAGAAACGAGATGGGAG 1 167 188683 FORWARD NC_003028.3[188683..188732]
SPNE99P001323111 NC_003028 AGACCCAAGAAGGGATTGTCAAAGGATTGAAGTATATTCCGATTAAGGAA 1 169 1323111 REVERSE NC_003028.3[1323111..1323160]

Total number of rows: 379366

Table truncated, full table size 48357 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7177.ndf.gz 15.1 Mb (ftp)(http) NDF
GPL7177.pos.gz 2.6 Mb (ftp)(http) POS

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