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Platform GPL7293 Query DataSets for GPL7293
Status Public on Oct 08, 2008
Title Agilent-013384 Yeast Oligo Microarray (V2) G4140B (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4140B
 
Description
This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction. Replaces 011447, G4140A.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL2883.
 
Submission date Sep 11, 2008
Last update date May 07, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (175) GSM393186, GSM393187, GSM393188, GSM393189, GSM393190, GSM393191 
Series (8)
GSE15710 Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering (S. cerevisiae, C. glabrata, K. lactis)
GSE20539 Rim15 and Igo1/Igo2 are required for proper transcriptional reprogramming during entry into G0 phase in budding yeast
GSE33695 DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1
Relations
Alternative to GPL2883

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ORF ORF Name
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ORF TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
A_06_P1001 A_06_P1001 FALSE Q0010 ens|Q0010|tc|TC16021 chrM:4243-4302 Putative uncharacterized mitochondrial protein Q0010. [Source:UniProtKB/Swiss-Prot;Acc:Q9ZZX9] [Q0010] AAATTTATTCTATGTGTGCTCTATATATATTTAATATTCTGGTTATTATCACCCACCCCC
A_06_P1002 A_06_P1002 FALSE Q0017 ens|Q0017|ens|Q0010|tc|TC16021 chrM:4268-4327 Putative uncharacterized mitochondrial protein Q0017. [Source:UniProtKB/Swiss-Prot;Acc:Q9ZZX8] [Q0017] TATATTTAATATTCTGGTTATTATCACCCACCCCCTCCCCCTATTACGTCTCCGAGGTCC
A_06_P1003 A_06_P1003 FALSE 854598 COX1 Cox1p Q0045 ens|Q0045 chrM:26642-26701 Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I). [Source:UniProtKB/Swiss-Prot;Acc:P00401] [Q0045] GO:0004129(cytochrome-c oxidase activity)|GO:0004518(nuclease activity)|GO:0005506(iron ion binding)|GO:0005507(copper ion binding)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0005746(mitochondrial respiratory chain)|GO:0005751(mitochondrial respiratory chain complex IV)|GO:0006123(mitochondrial electron transport, cytochrome c to oxygen)|GO:0006810(transport)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0016788(hydrolase activity, acting on ester bonds)|GO:0020037(heme binding)|GO:0022900(electron transport chain)|GO:0046872(metal ion binding)|GO:0055114(oxidation reduction) TTCTTATTAACTTCTCCACCAGCTGTACACTCATTTAATACACCAGCTGTACAATCTTAA
A_06_P1004 A_06_P1004 FALSE 854593 AI1 Ai1p Q0050 ens|Q0050|tc|TC13675 chrM:16145-16204 Putative COX1/OXI3 intron 1 protein. [Source:UniProtKB/Swiss-Prot;Acc:P03875] [Q0050] GO:0003676(nucleic acid binding)|GO:0003723(RNA binding)|GO:0003964(RNA-directed DNA polymerase activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006278(RNA-dependent DNA replication)|GO:0006315(homing of group II introns)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016021(integral to membrane)|GO:0020037(heme binding)|GO:0045333(cellular respiration) AACTATTGATGTAGAAATACATCATGTTAAACAATTACATAGAGGTATATTAAAAGCACT
A_06_P1005 A_06_P1005 FALSE 854594 AI2 Ai2p Q0055 ens|Q0055|tc|TC13674 chrM:18590-18649 Putative COX1/OXI3 intron 2 protein. [Source:UniProtKB/Swiss-Prot;Acc:P03876] [Q0055] GO:0003676(nucleic acid binding)|GO:0003723(RNA binding)|GO:0003964(RNA-directed DNA polymerase activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006278(RNA-dependent DNA replication)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016021(integral to membrane)|GO:0020037(heme binding) AGATAGATATAAATATATGTTACCTAGATCTTTATCATTATTTAGTGGTATTTGTCAAAT
A_06_P1006 A_06_P1006 FALSE 854595 AI3 Ai3p Q0060 ens|Q0060|tc|TC13676 chrM:19816-19875 Ai3p [Source:RefSeq_peptide;Acc:NP_009308] [Q0060] GO:0003677(DNA binding)|GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008150(biological_process)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding) ATCTAAACACTTAGATTTTTTAGATTGATCTAAATTAGTTATTTTAATTAATAATGAGGG
A_06_P1007 A_06_P1007 FALSE 854596 AI4 Ai4p Q0065 ens|Q0065|tc|TC13672 chrM:21876-21935 Intron-encoded DNA endonuclease aI4 precursor (DNA endonuclease I- SceII) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]. [Source:UniProtKB/Swiss-Prot;Acc:P03878] [Q0065] GO:0003677(DNA binding)|GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding) TCTGATTCAATACAATATAAAGCATGATTAAATTTTGAAAATAAATGAAAAAATAAATAA
A_06_P1008 A_06_P1008 FALSE 854597 AI5_ALPHA Ai5_alphap Q0070 ens|Q0070|tc|TC13673 chrM:22905-22964 Intron-encoded DNA endonuclease aI5 alpha precursor (DNA endonuclease I-SceIV) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I- SceIV)]. [Source:UniProtKB/Swiss-Prot;Acc:Q9ZZX1] [Q0070] GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006316(movement of group I intron)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding) ATGGTTCATTTGTAAAAGGTGGAGGTTTATATTTAAATTTACAATCTTTTCTAACTAAAG
A_06_P1009 A_06_P1009 FALSE 854599 AI5_BETA Ai5_betap Q0075 ens|Q0075|tc|NP253245 chrM:24996-25055 Intron-encoded DNA endonuclease aI5 beta (EC 3.1.-.-). [Source:UniProtKB/Swiss-Prot;Acc:Q9ZZX0] [Q0075] GO:0003674(molecular_function)|GO:0003677(DNA binding)|GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0008150(biological_process)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0020037(heme binding) CAAAAGCTATAAAACCTTTTATTGAATATTTTAATAATTATCAACCATTAAGTCTTAGAA
A_06_P1010 A_06_P1010 FALSE 854600 ATP8 Atp8p Q0080 ens|Q0080|tc|TC15304 chrM:27693-27752 ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8) (A6L) (ATP- associated protein 1). [Source:UniProtKB/Swiss-Prot;Acc:P00856] [Q0080] GO:0000276(mitochondrial proton-transporting ATP synthase complex, coupling factor F(o))|GO:0005739(mitochondrion)|GO:0006754(ATP biosynthetic process)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0006818(hydrogen transport)|GO:0015078(hydrogen ion transmembrane transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015992(proton transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0031966(mitochondrial membrane)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046872(metal ion binding)|GO:0046933(hydrogen ion transporting ATP synthase activity, rotational mechanism) ATGAATCAATTAACATATGGTTTCTTATTAATGATTCTATTATTAATTTTATTCTCACAA
A_06_P1011 A_06_P1011 FALSE 854601 ATP6 Atp6p Q0085 ens|Q0085 chrM:29195-29254 ATP synthase a chain precursor (EC 3.6.3.14) (ATPase protein 6). [Source:UniProtKB/Swiss-Prot;Acc:P00854] [Q0085] GO:0000276(mitochondrial proton-transporting ATP synthase complex, coupling factor F(o))|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0006754(ATP biosynthetic process)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0006818(hydrogen transport)|GO:0015078(hydrogen ion transmembrane transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015992(proton transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016887(ATPase activity)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046872(metal ion binding)|GO:0046933(hydrogen ion transporting ATP synthase activity, rotational mechanism) GGTATCATTCAGGGATATGTCTGGGCTATTTTAACAGCATCATATTTAAAAGATGCAGTA
A_06_P1012 A_06_P1012 FALSE X84042 854583 COB Cobp Q0105 ens|Q0105|gb|X84042|tc|TC12211 chrM:43519-43578 Cytochrome b (Ubiquinol-cytochrome-c reductase complex cytochrome b subunit) (Complex III subunit CYTB) (Cytochrome b-c1 complex subunit CYTB). [Source:UniProtKB/Swiss-Prot;Acc:P00163] [Q0105] GO:0005506(iron ion binding)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0005746(mitochondrial respiratory chain)|GO:0005750(mitochondrial respiratory chain complex III)|GO:0006122(mitochondrial electron transport, ubiquinol to cytochrome c)|GO:0006810(transport)|GO:0008121(ubiquinol-cytochrome-c reductase activity)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0022900(electron transport chain)|GO:0022904(respiratory electron transport chain)|GO:0045153(electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity)|GO:0046872(metal ion binding)|GO:0055114(oxidation reduction) GTAGAAGTACCTTATGTCTTAATGGGACAAATCGCTACATTTATCTACTTCGCTTATTTC
A_06_P1013 A_06_P1013 FALSE 854604 BI2 Bi2p Q0110 ens|Q0110|tc|TC12213 chrM:38459-38518 Cytochrome b mRNA maturase bI2. [Source:UniProtKB/Swiss-Prot;Acc:P03873] [Q0110] GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0022904(respiratory electron transport chain) CAATAAAGAAAATACACAATTTGTTATTTATGTATGAAAAGAATCTATACCTATTTTAAC
A_06_P1014 A_06_P1014 FALSE 854605 BI3 Bi3p Q0115 ens|Q0115|tc|TC12214 chrM:39977-40036 Cytochrome b mRNA maturase bI3. [Source:UniProtKB/Swiss-Prot;Acc:Q9ZZW7] [Q0115] GO:0000372(Group I intron splicing)|GO:0003677(DNA binding)|GO:0003723(RNA binding)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0022904(respiratory electron transport chain) TAAAAAAATAAAACTTGCTAGTTTTGAAGTATCTCAAAATAATAGTATAGAAGTTATATT
A_06_P1015 A_06_P1015 FALSE 854582 BI4 Bi4p Q0120 ens|Q0120|tc|TC12212 chrM:42192-42251 Intron-encoded RNA maturase bI4 precursor (RNA maturase SCbI4) [Contains: Truncated, nonfunctional cytochrome b; RNA maturase bI4 (EC 3.1.-.-)]. [Source:UniProtKB/Swiss-Prot;Acc:P03879] [Q0120] GO:0000372(Group I intron splicing)|GO:0003677(DNA binding)|GO:0003723(RNA binding)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016491(oxidoreductase activity)|GO:0022904(respiratory electron transport chain) CATAATACTGCTTTATATAAAGCTTGATTAAAATTTAATGAAAAATGAAATAATAATTAA
A_06_P1016 A_06_P1016 FALSE 854584 OLI1 F0-ATP synthase subunit 9 (ATPase-associated proteolipid), encoded on the mitochondrial genome; mutation confers oligomycin resistance; expression is specifically dependent on the nuclear genes AEP1 and AEP2 Q0130 ens|Q0130|tc|TC15185 chrM:46873-46932 ATP synthase protein 9, mitochondrial (EC 3.6.3.14) (Lipid-binding protein) (Oligomycin resistance protein 1). [Source:UniProtKB/Swiss-Prot;Acc:P61829] [Q0130] GO:0000276(mitochondrial proton-transporting ATP synthase complex, coupling factor F(o))|GO:0005739(mitochondrion)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0006818(hydrogen transport)|GO:0008289(lipid binding)|GO:0015078(hydrogen ion transmembrane transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015992(proton transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016887(ATPase activity)|GO:0031966(mitochondrial membrane)|GO:0033177(proton-transporting two-sector ATPase complex, proton-transporting domain)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046933(hydrogen ion transporting ATP synthase activity, rotational mechanism) GCTATTTTAGGTTTCGCCTTATCAGAAGCTACAGGTTTATTCTGTTTAATGGTTTCATTC
A_06_P1017 A_06_P1017 FALSE 854586 VAR1 Mitochondrial ribosomal protein of the small subunit, mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane Q0140 ens|Q0140|tc|NP263974|tc|TC12704 chrM:49896-49955 Mitochondrial ribosomal protein VAR1. [Source:UniProtKB/Swiss-Prot;Acc:P02381] [Q0140] GO:0000028(ribosomal small subunit assembly)|GO:0003735(structural constituent of ribosome)|GO:0005739(mitochondrion)|GO:0005761(mitochondrial ribosome)|GO:0005763(mitochondrial small ribosomal subunit)|GO:0005840(ribosome)|GO:0006412(translation)|GO:0030529(ribonucleoprotein complex)|GO:0032543(mitochondrial translation) AGGTAGATTAAGTAATAATAATGGTAGAACTAGTACACTTAATTTATTAAATGGTACTTT
A_06_P1018 A_06_P1018 FALSE 854590 SCEI I-SceI DNA endonuclease, encoded by the mitochondrial group I intron of the 21S_rRNA gene; mediates gene conversion that propagates the intron into intron-less copies of the 21S_rRNA gene Q0160 ens|Q0160|tc|TC15373 chrM:61461-61520 Intron-encoded endonuclease I-SceI (EC 3.1.-.-) (21S rRNA intron maturase) (Homing endonuclease omega). [Source:UniProtKB/Swiss-Prot;Acc:P03882] [Q0160] GO:0004518(nuclease activity)|GO:0004519(endonuclease activity)|GO:0005739(mitochondrion)|GO:0006314(intron homing)|GO:0006397(mRNA processing)|GO:0008380(RNA splicing)|GO:0016020(membrane)|GO:0016787(hydrolase activity)|GO:0022904(respiratory electron transport chain) GTAAATGAGATTATAATAAAAATTCTCTTAATAAAAGTATTGTATTAAATACACAAAGTT
A_06_P1019 A_06_P1019 FALSE K00234 Q0182 ens|Q0182|gb|K00234|gb|X04560|gb|M27722 chrM:66105-66164 Putative uncharacterized mitochondrial protein Q0182. [Source:UniProtKB/Swiss-Prot;Acc:Q9ZZW1] [Q0182] TGGAATTGGTAGACACGATACTCTTAAGATGTATTACTTTACAGTATGAAGGTTCAAGTC
A_06_P1020 A_06_P1020 FALSE 854622 COX2 Cox2p Q0250 ens|Q0250|tc|TC13657|tc|TC13656 chrM:74244-74303 Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II). [Source:UniProtKB/Swiss-Prot;Acc:P00410] [Q0250] GO:0004129(cytochrome-c oxidase activity)|GO:0005507(copper ion binding)|GO:0005739(mitochondrion)|GO:0005743(mitochondrial inner membrane)|GO:0005746(mitochondrial respiratory chain)|GO:0005751(mitochondrial respiratory chain complex IV)|GO:0006123(mitochondrial electron transport, cytochrome c to oxygen)|GO:0006810(transport)|GO:0009055(electron carrier activity)|GO:0009060(aerobic respiration)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0020037(heme binding)|GO:0022900(electron transport chain)|GO:0022904(respiratory electron transport chain)|GO:0046872(metal ion binding)|GO:0055114(oxidation reduction) ACTGATACTTCTATAGTTGTACCTGTAGATACACATATTAGATTCGTTGTAACAGCTGCT

Total number of rows: 6320

Table truncated, full table size 4186 Kbytes.




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