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Status
Public on Oct 16, 2009
Title
PF - Agilent-014850 Whole Human Genome Microarray 4x44K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4112F
Description
This multi-pack (4X44K) formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process.
Submission date
Jun 23, 2009
Last update date
Jan 18, 2013
Contact name
Stéphane VISPE
E-mail(s)
stephane.vispe@pierre-fabre.com Organization name
Laboratoires Pierre Fabre
Street address
3 Rue des Satellites
City
Toulouse
ZIP/Postal code
31000
Country
France
Samples (58)
GSM419930 , GSM419931 , GSM419932 , GSM419933 , GSM419934 , GSM419935
GSM419936 ,
GSM419937 ,
GSM419938 ,
GSM419939 ,
GSM419971 ,
GSM419984 ,
GSM419985 ,
GSM419986 ,
GSM419993 ,
GSM419994 ,
GSM420002 ,
GSM420003 ,
GSM420004 ,
GSM420006 ,
GSM420107 ,
GSM420109 ,
GSM420110 ,
GSM420112 ,
GSM420113 ,
GSM420115 ,
GSM420119 ,
GSM420120 ,
GSM420121 ,
GSM420122 ,
GSM420123 ,
GSM420136 ,
GSM420137 ,
GSM420139 ,
GSM420140 ,
GSM420142 ,
GSM592998 ,
GSM592999 ,
GSM593000 ,
GSM593001 ,
GSM593002 ,
GSM593003 ,
GSM593004 ,
GSM593005 ,
GSM593006 ,
GSM593007 ,
GSM593008 ,
GSM593009 ,
GSM593010 ,
GSM593011 ,
GSM593012 ,
GSM593013 ,
GSM907515 ,
GSM907516 ,
GSM1039514 ,
GSM1039515 ,
GSM1039516 ,
GSM1039517 Series (4)
GSE16760 Whole genome analysis in A549 cells treated for short incubation periods with various concentrations of triptolide
GSE24084 RNA expression patterns in serum microvesicles from patients with glioblastoma multiforme and controls
GSE36966 TLS-CHOP Fusion Oncoprotein Regulates MicroRNA-486 in Human Myxoid Liposarcoma
GSE42412 ING4 regulates a secretory phenotype in primary fibroblasts with dual effects on cell proliferation and tumor growth
Data table header descriptions ID ACCESSIONS Accessions
SEQUENCE Sequence of oligonucleotide
PROBENAME Agilent Probe Name
GENENAME Gene Name
DESCRIPTION Description
CONTROL_TYPE Control type
GB_ACC SPOT_ID
Data table ID ACCESSIONS SEQUENCE PROBENAME GENENAME DESCRIPTION CONTROL_TYPE GB_ACC SPOT_ID 1
GE_BrightCorner
1
GE_BrightCorner
2
DarkCorner
1
DarkCorner
3
DarkCorner
1
DarkCorner
4
DarkCorner
1
DarkCorner
5
DarkCorner
1
DarkCorner
6
DarkCorner
1
DarkCorner
7
DarkCorner
1
DarkCorner
8
DarkCorner
1
DarkCorner
9
DarkCorner
1
DarkCorner
10
DarkCorner
1
DarkCorner
11
DarkCorner
1
DarkCorner
12
ref|NM_004900|ref|NM_145699|ens|ENST00000333467|ens|ENST00000249116
GCTGCCCGCATCTATGATTACGACCCCCTATATAAGGAGGCGCTGCAAATGCTGCGGGAT
A_24_P66027
APOBEC3B
Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B (APOBEC3B), mRNA [NM_004900]
0
NM_004900 13
gb|AA085955|gb|AL567297|gb|BF871687|gb|BM671900
GGTCAATTTTTGGTCAAAAGTACAGAGAGCATAGAATAAAAGCAAAGATGTGAATGTCTC
A_32_P77178
AA085955
AA085955 zl83f11.s1 Stratagene colon (#937204) Homo sapiens cDNA clone IMAGE:511245 3', mRNA sequence [AA085955]
0
AA085955 14
ref|NM_014616|ens|ENST00000323116|gb|AB023173|gb|AL133061
ATTTTCTAACTGTCCTCTTTCTTGGGTCTAAAGCTCATAATACACAAAGGCTTCCAGACC
A_23_P212522
ATP11B
Homo sapiens ATPase, Class VI, type 11B (ATP11B), mRNA [NM_014616]
0
NM_014616 15
gb|AK092846|gb|AX747763|thc|THC2483825
AAGCCAAGTACTTTAGAGAAGAAAAACGGTCTCAGCTGAACCTGTAGTGAGAGCATGCAG
A_24_P934473
AK092846
Homo sapiens cDNA FLJ35527 fis, clone SPLEN2001781. [AK092846]
0
AK092846 16
ref|NM_001539|gb|AY186741|gb|BT007292|gb|D13388
ATCCAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAA
A_24_P9671
DNAJA1
Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1), mRNA [NM_001539]
0
NM_001539 17
thc|THC2741789
CCTCTGTCTGGCTTTCTGGATCCTTAGATGAATTGCAGTTGGATTGGAATTTGGCACAAA
A_32_P29551
THC2741789
Unknown
0
THC2741789
18
ref|NM_006709|ref|NM_025256|gb|BC018718|ens|ENST00000375530
AAATCGGGCCATCCGCACCAGAGGAAGATCATTCTGCCGGGACGTGGCTCGGGGCTATGA
A_24_P801451
EHMT2
Homo sapiens euchromatic histone-lysine N-methyltransferase 2 (EHMT2), transcript variant NG36/G9a, mRNA [NM_006709]
0
NM_006709 19
ref|NM_000978|gb|BC034378|ens|ENST00000245857|ens|ENST00000378096
ACGAAAGTCATACCGTAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGAGT
A_32_P30710
RPL23
Homo sapiens ribosomal protein L23 (RPL23), mRNA [NM_000978]
0
NM_000978 20
gb|T12590
GAATTTCTTCTTCTTCATCAAGAAAGCCATGAGCGAGTTCCCTGAGTCTGAAGCCCCGAA
A_32_P89523
T12590
T12590 CHR90110 Chromosome 9 exon II Homo sapiens cDNA clone P94_55 5' and 3', mRNA sequence [T12590]
0
T12590
45015 9682 Kbytes .Supplementary data files not provided
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