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Status
Public on Mar 11, 2002
Title
[HG_U95D] Affymetrix Human Genome U95D Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=hgu95 http://www.affymetrix.com/analysis/index.affx Submission date
Feb 19, 2002
Last update date
Jun 03, 2009
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (194)
GSM1342 , GSM4234 , GSM4239 , GSM4398 , GSM4403 , GSM11744
GSM11750 ,
GSM11799 ,
GSM11856 ,
GSM11880 ,
GSM12637 ,
GSM12642 ,
GSM12647 ,
GSM12652 ,
GSM12657 ,
GSM12662 ,
GSM12667 ,
GSM12672 ,
GSM12677 ,
GSM12681 ,
GSM12686 ,
GSM12691 ,
GSM12696 ,
GSM12701 ,
GSM12706 ,
GSM12711 ,
GSM12716 ,
GSM12721 ,
GSM12726 ,
GSM12731 ,
GSM12736 ,
GSM12741 ,
GSM12746 ,
GSM12751 ,
GSM16226 ,
GSM16227 ,
GSM16228 ,
GSM16229 ,
GSM16230 ,
GSM16231 ,
GSM16232 ,
GSM16233 ,
GSM16234 ,
GSM16235 ,
GSM16236 ,
GSM16237 ,
GSM16244 ,
GSM16245 ,
GSM16249 ,
GSM16250 ,
GSM16254 ,
GSM16255 ,
GSM16256 ,
GSM16257 ,
GSM16258 ,
GSM16259 ,
GSM21566 ,
GSM21567 ,
GSM21568 ,
GSM21569 ,
GSM21570 ,
GSM21571 ,
GSM21572 ,
GSM21573 ,
GSM21574 ,
GSM21575 ,
GSM21576 ,
GSM21577 ,
GSM21578 ,
GSM21579 ,
GSM21580 ,
GSM47561 ,
GSM47562 ,
GSM47563 ,
GSM47564 ,
GSM47565 ,
GSM47566 ,
GSM47567 ,
GSM47568 ,
GSM47569 ,
GSM47570 ,
GSM47571 ,
GSM47572 ,
GSM47573 ,
GSM47574 ,
GSM47575 ,
GSM47576 ,
GSM47577 ,
GSM47578 ,
GSM47579 ,
GSM47580 ,
GSM47581 ,
GSM47582 ,
GSM47583 ,
GSM47584 ,
GSM47585 ,
GSM47586 ,
GSM47587 ,
GSM47588 ,
GSM47589 ,
GSM47590 ,
GSM47591 ,
GSM47592 ,
GSM47593 ,
GSM47594 ,
GSM47595 ,
GSM47596 ,
GSM47597 ,
GSM47598 ,
GSM47599 ,
GSM133998 ,
GSM134003 ,
GSM134008 ,
GSM134013 ,
GSM134018 ,
GSM134023 ,
GSM134028 ,
GSM134033 ,
GSM134038 ,
GSM134043 ,
GSM134048 ,
GSM134053 ,
GSM134058 ,
GSM134063 ,
GSM134068 ,
GSM134073 ,
GSM134078 ,
GSM134083 ,
GSM134088 ,
GSM134093 ,
GSM134098 ,
GSM134103 ,
GSM134108 ,
GSM134113 ,
GSM134118 ,
GSM134123 ,
GSM134128 ,
GSM134133 ,
GSM134138 ,
GSM134143 ,
GSM134148 ,
GSM134153 ,
GSM134158 ,
GSM134163 ,
GSM134168 ,
GSM134173 ,
GSM134178 ,
GSM134183 ,
GSM134188 ,
GSM134193 ,
GSM134198 ,
GSM134205 ,
GSM134212 ,
GSM134217 ,
GSM134222 ,
GSM134227 ,
GSM134232 ,
GSM134237 ,
GSM134242 ,
GSM134247 ,
GSM134252 ,
GSM134257 ,
GSM134262 ,
GSM134267 ,
GSM134272 ,
GSM134277 ,
GSM134282 ,
GSM134287 ,
GSM134292 ,
GSM134297 ,
GSM1249627 ,
GSM1249628 ,
GSM1249629 ,
GSM1249630 ,
GSM1249631 ,
GSM1249632 ,
GSM1249633 ,
GSM1249634 ,
GSM1249635 ,
GSM1249636 ,
GSM1249637 ,
GSM1249638 ,
GSM1249639 ,
GSM1249640 ,
GSM1249641 ,
GSM1249642 ,
GSM1249643 ,
GSM1249644 ,
GSM1249645 ,
GSM1249646 ,
GSM1249647 ,
GSM1249648 ,
GSM1249649 ,
GSM1249650 Series (8)
GSE465 Expression profiling in the muscular dystrophies
GSE762 CCFAlmasan_CaP1
GSE803 GeneNote-Gene Normal tissue Expression
GSE1007 Molecular profiles(HG-U95B,C,D,E) of dystrophin-deficient and normal human skeletal muscle
GSE1302 primary trophoblast study
GSE2508 Expression profiling in adipocytes of obese humans
GSE5949 Comparison between cell lines from 9 different cancer tissue (NCI-60) (U95 platform)
GSE51625 Expression data from human abdominal, subcutaneous adipose tissue
Data table header descriptions ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function 67020_at AI656643 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI656643:tt53c01.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2244480 /clone_end=3' /gb=AI656643 /gi=4740622 /ug=Hs.156495 /len=494
AI656643
67021_at AI342009 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI342009:qt05e02.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1946714 /clone_end=3' /gb=AI342009 /gi=4078936 /ug=Hs.156496 /len=488
AI342009
67023_at AI342132 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI342132:qt26c08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1949102 /clone_end=3' /gb=AI342132 /gi=4079059 /ug=Hs.156499 /len=414
AI342132
67025_at AI342425 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI342425:qt39b06.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1950323 /clone_end=3' /gb=AI342425 /gi=4079352 /ug=Hs.156506 /len=382
AI342425
67027_at AA724317 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AA724317:ah99d03.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1327205 /clone_end=3' /gb=AA724317 /gi=2742024 /ug=Hs.156518 /len=336
AA724317
67029_at AI829596 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI829596:wf28g08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2356958 /clone_end=3' /gb=AI829596 /gi=5450267 /ug=Hs.156530 /len=626
AI829596
67031_at AA931376 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AA931376:oo03d10.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1565107 /clone_end=3' /gb=AA931376 /gi=3085762 /ug=Hs.156542 /len=382
AA931376
67033_at AI963769 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI963769:wr66g10.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2492706 /clone_end=3' /gb=AI963769 /gi=5756482 /ug=Hs.156545 /len=470
AI963769
67034_at AA824316 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AA824316:aj30c04.s1 Homo sapiens cDNA, 3' end /clone=1391814 /clone_end=3' /gb=AA824316 /gi=2896386 /ug=Hs.156546 /len=460
AA824316
hypothetical protein LOC100130729
LOC100130729
100130729 XM_001717967 /// XM_001720633 /// XM_001724583
67036_at AI692973 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI692973:wd36e02.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2330234 /clone_end=3' /gb=AI692973 /gi=4970313 /ug=Hs.156564 /len=452
AI692973
67037_at AA834974 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AA834974:aj50a04.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1393710 /clone_end=3' /gb=AA834974 /gi=2908702 /ug=Hs.156566 /len=445
AA834974
67039_g_at AA834974 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AA834974:aj50a04.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1393710 /clone_end=3' /gb=AA834974 /gi=2908702 /ug=Hs.156566 /len=445
AA834974
67041_at AI418565 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI418565:tg37b07.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2110933 /clone_end=3' /gb=AI418565 /gi=4264496 /ug=Hs.156566 /len=443
AI418565
67043_at AI795964 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI795964:wh40g01.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2383248 /clone_end=3' /gb=AI795964 /gi=5361427 /ug=Hs.156593 /len=512
AI795964
67045_r_at AI343144 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI343144:tb02g08.x2 Homo sapiens cDNA, 3' end /clone=IMAGE-2052446 /clone_end=3' /gb=AI343144 /gi=4080350 /ug=Hs.156596 /len=461
AI343144
67047_at AI768744 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI768744:wi86c11.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2400212 /clone_end=3' /gb=AI768744 /gi=5235253 /ug=Hs.156600 /len=405
AI768744
67051_r_at AI345851 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI345851:tb86a01.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2061192 /clone_end=3' /gb=AI345851 /gi=4083057 /ug=Hs.156608 /len=171
AI345851
67053_at AI344234 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI344234:tb88e08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2061446 /clone_end=3' /gb=AI344234 /gi=4081440 /ug=Hs.156612 /len=322
AI344234
FK506 binding protein 7 (FKBP7), transcript variant 2, mRNA
FKBP7
51661 NM_001135212 /// NM_181342
0006457 // protein folding // inferred from electronic annotation
0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation
0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation
67054_at AI307799 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI307799:tb28c07.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2055660 /clone_end=3' /gb=AI307799 /gi=4002403 /ug=Hs.156628 /len=593
AI307799
sulfotransferase family, cytosolic, 1C, member 2
SULT1C2
6819 NM_001056 /// NM_176825
0009308 // cellular amine metabolic process // traceable author statement
0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay
0008146 // sulfotransferase activity // traceable author statement /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
67056_at AI345171 Homo sapiens
Mar 11, 2009
Consensus sequence
GenBank
Cluster Incl. AI345171:tb80g12.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2060710 /clone_end=3' /gb=AI345171 /gi=4082377 /ug=Hs.156633 /len=551
AI345171
12644 6412 Kbytes .Supplementary data files not provided
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