GEO help: Mouse over screen elements for information.
Status
Public on Jan 16, 2010
Title
Duke Taeniopygia guttata 45K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Taeniopygia guttata Manufacturer
Agilent
Manufacture protocol
Using Agilent eArray 5.4, a web-based application, we designed custom microarrays. The microarrays are manufactured using a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the oligonucleotide. Agilent’s real time quality control inspection system verifies chemical deposition at each step in the process to minimize or eliminate feature drop-out and premature truncation of the oligonucleotide probe.
Catalog number
AMADID - 022706
Contributor(s)
Whitney O , Pfenning A , Howard J , Jarvis E Submission date
Jan 05, 2010
Last update date
Jan 18, 2013
Contact name
Osceola Whitney
E-mail(s)
whitney@neuro.duke.edu Phone
919-681-1681
Fax
919-681-0877
URL
http://songbirdtranscriptome.net/ Organization name
Duke University Medical Center
Department
Neurobiology
Lab
Erich Jarvis Lab
Street address
Research Drive, Bryan Research Building, Room 401E
City
Durham
State/province
NC
ZIP/Postal code
27710
Country
USA
Samples (272)
GSM497501 , GSM497502 , GSM497503 , GSM497504 , GSM497505 , GSM497506
GSM497507 ,
GSM497508 ,
GSM497509 ,
GSM497510 ,
GSM497511 ,
GSM497512 ,
GSM497513 ,
GSM497514 ,
GSM497515 ,
GSM497516 ,
GSM497517 ,
GSM497518 ,
GSM497519 ,
GSM497520 ,
GSM497521 ,
GSM497522 ,
GSM497523 ,
GSM497524 ,
GSM497525 ,
GSM497526 ,
GSM497527 ,
GSM497528 ,
GSM497529 ,
GSM497530 ,
GSM497531 ,
GSM497532 ,
GSM497533 ,
GSM497534 ,
GSM497535 ,
GSM497536 ,
GSM497537 ,
GSM497538 ,
GSM497539 ,
GSM497540 ,
GSM497541 ,
GSM497542 ,
GSM497543 ,
GSM497544 ,
GSM497545 ,
GSM497546 ,
GSM629080 ,
GSM701872 ,
GSM701873 ,
GSM701874 ,
GSM701875 ,
GSM701876 ,
GSM701877 ,
GSM701878 ,
GSM701879 ,
GSM701880 ,
GSM701881 ,
GSM701882 ,
GSM701883 ,
GSM701884 ,
GSM701885 ,
GSM701886 ,
GSM701887 ,
GSM701888 ,
GSM701889 ,
GSM701890 ,
GSM701891 ,
GSM701892 ,
GSM701893 ,
GSM701894 ,
GSM701895 ,
GSM701896 ,
GSM701897 ,
GSM701898 ,
GSM825168 ,
GSM825169 ,
GSM825170 ,
GSM825171 ,
GSM825172 ,
GSM825173 ,
GSM825174 ,
GSM825175 ,
GSM825176 ,
GSM825177 ,
GSM825178 ,
GSM825179 ,
GSM825180 ,
GSM825181 ,
GSM825182 ,
GSM825183 ,
GSM825184 ,
GSM825185 ,
GSM825186 ,
GSM825187 ,
GSM825188 ,
GSM825189 ,
GSM825190 ,
GSM825191 ,
GSM825192 ,
GSM825193 ,
GSM825194 ,
GSM825195 ,
GSM825196 ,
GSM825197 ,
GSM825198 ,
GSM825199 ,
GSM825200 ,
GSM825201 ,
GSM825202 ,
GSM825203 ,
GSM825204 ,
GSM825205 ,
GSM825206 ,
GSM825207 ,
GSM825208 ,
GSM825209 ,
GSM825210 ,
GSM825211 ,
GSM825212 ,
GSM825213 ,
GSM825214 ,
GSM825215 ,
GSM825216 ,
GSM825217 ,
GSM825218 ,
GSM825219 ,
GSM825220 ,
GSM825221 ,
GSM825222 ,
GSM825223 ,
GSM825224 ,
GSM825225 ,
GSM825226 ,
GSM825227 ,
GSM825228 ,
GSM825229 ,
GSM825230 ,
GSM825231 ,
GSM825232 ,
GSM825233 ,
GSM825234 ,
GSM825235 ,
GSM825236 ,
GSM825237 ,
GSM825238 ,
GSM825239 ,
GSM825240 ,
GSM825241 ,
GSM825242 ,
GSM825243 ,
GSM825244 ,
GSM825245 ,
GSM825246 ,
GSM825247 ,
GSM825248 ,
GSM825249 ,
GSM825250 ,
GSM825251 ,
GSM825252 ,
GSM825253 ,
GSM825254 ,
GSM825255 ,
GSM825256 ,
GSM825257 ,
GSM825258 ,
GSM825259 ,
GSM825260 ,
GSM825261 ,
GSM825262 ,
GSM825263 ,
GSM825264 ,
GSM825265 ,
GSM825266 ,
GSM825267 ,
GSM825268 ,
GSM825269 ,
GSM825270 ,
GSM825271 ,
GSM825272 ,
GSM825273 ,
GSM825274 ,
GSM825275 ,
GSM825276 ,
GSM825277 ,
GSM825278 ,
GSM825279 ,
GSM825280 ,
GSM825281 ,
GSM825282 ,
GSM825283 ,
GSM825284 ,
GSM825285 ,
GSM825286 ,
GSM825287 ,
GSM825288 ,
GSM825289 ,
GSM825290 ,
GSM825291 ,
GSM825292 ,
GSM825293 ,
GSM825294 ,
GSM825295 ,
GSM825296 ,
GSM825297 ,
GSM825298 ,
GSM825299 ,
GSM825300 ,
GSM825301 ,
GSM825302 ,
GSM825303 ,
GSM825304 ,
GSM825305 ,
GSM825306 ,
GSM825307 ,
GSM825308 ,
GSM825309 ,
GSM825310 ,
GSM825311 ,
GSM825312 ,
GSM825313 ,
GSM825314 ,
GSM825315 ,
GSM825316 ,
GSM825317 ,
GSM825318 ,
GSM825319 ,
GSM825320 ,
GSM825321 ,
GSM825322 ,
GSM825323 ,
GSM825324 ,
GSM825325 ,
GSM825326 ,
GSM825327 ,
GSM825328 ,
GSM825329 ,
GSM825330 ,
GSM825331 ,
GSM825332 ,
GSM825333 ,
GSM825334 ,
GSM825335 ,
GSM825336 ,
GSM825337 ,
GSM832501 ,
GSM832502 ,
GSM832503 ,
GSM832504 ,
GSM832505 ,
GSM832506 ,
GSM832507 ,
GSM832508 ,
GSM832509 ,
GSM832510 ,
GSM832511 ,
GSM832512 ,
GSM832513 ,
GSM832514 ,
GSM832515 ,
GSM832516 ,
GSM832517 ,
GSM832518 ,
GSM832519 ,
GSM832520 ,
GSM832521 ,
GSM832522 ,
GSM832523 ,
GSM832524 ,
GSM832525 ,
GSM832526 ,
GSM832527 ,
GSM832528 Series (4)
GSE19900 The genome of a songbird
GSE28395 Avian arcopallium
GSE33365 The singing genome: Core and region enriched gene expression define behaviorally regulated gene networks
Data table header descriptions ID featureid feature ID
cloneid clone ID
clusterid cluster ID
subclusterid subcluster ID
location location
library library number
status status
estimaid estima ID
ncEst non-coding expressed sequence tag
finalRNA final RNA
ensid ensembl ID
ensScore ensembl score
enstype ensembl type
esnchr ensembl chromasome
ensname ensembl symbol
ensdesc ensembl description
dukename duke name
dukedescription duke description
chickenname chicken name
chickendescription chicken description
humanname human name
humandescription human description
finalName final name
finalDesc final description
finalScore final score
evidence evidence
CLONE_ID SPOT_ID SEQUENCE sequence of probe
Data table ID featureid cloneid clusterid subclusterid location library status estimaid ncEst finalRNA ensid ensScore enstype esnchr ensname ensdesc dukename dukedescription chickenname chickendescription humanname humandescription finalName finalDesc finalScore evidence CLONE_ID SPOT_ID SEQUENCE GE_BrightCorner
GE_BrightCorner
GE_BrightCorner
--GE_BrightCorner
DarkCorner
DarkCorner
DarkCorner
--DarkCorner
DarkCorner-2
DarkCorner-2
DarkCorner
--DarkCorner-2
DarkCorner-3
DarkCorner-3
DarkCorner
--DarkCorner-3
DarkCorner-4
DarkCorner-4
DarkCorner
--DarkCorner-4
DarkCorner-5
DarkCorner-5
DarkCorner
--DarkCorner-5
DarkCorner-6
DarkCorner-6
DarkCorner
--DarkCorner-6
DarkCorner-7
DarkCorner-7
DarkCorner
--DarkCorner-7
DarkCorner-8
DarkCorner-8
DarkCorner
--DarkCorner-8
DarkCorner-9
DarkCorner-9
DarkCorner
--DarkCorner-9
DarkCorner-10
DarkCorner-10
DarkCorner
--DarkCorner-10
0205P0030B17
0205P0030B17
0205P0030B17
20722A060BAD472A9A449CF0598A4F8E
EA9353354BBF42A6A73BFCFFF795DB64
Ill
5
1
SB05030B1A09.f1
1
1
null
unknown 0061P0018G08
LOR
loricrin
FOXO3
5
"(5)xeno-refseq:FOXO3(x5):1399,FOXO5(x1):1399,LOC100301621(x1):1399,(2):human_blast,finalname"
SB05030B1A09.f1
AGCTCTTAACTGTACGAGCTCCTGCGGATGAAAGTCTGCTTTTGGGACAGGCCCCGCAGT
0202P0024M14
0202P0024M14
0202P0024M14
BD6FAF8D48C74C55B2E910732BDF96E8
CAB0739305574278A747394FFD324099
Ill
2
2
SB02024A2G07.f1
0
0
ENSTGUG00000005056
2690
protein_coding
chr19
GBAS
Protein NipSnap homolog 2 (NipSnap2)(Glioblastoma-amplified sequence) [Taeniopygia guttata]
null
unknown 0202P0024M14
GBAS
glioblastoma amplified sequence
GBAS
Protein NipSnap homolog 2 (NipSnap2)(Glioblastoma-amplified sequence) [Taeniopygia guttata]
1
"(1):finalname,(1)ensembl:GBAS(chr19):2634"
SB02024A2G07.f1
CTGTAAGTGACAATAATATTCTCTCTCTCTCTCTCAAGTGGCTCCAAGAATCAGTGTAAC
0205P0028D09
0205P0028D09
0205P0028D09
365416CD5A614043ABD48648E73074EC
FBC7579B48E543BBB84296CC25CB9979
Ill
5
2
SB05028B1B05.f1
0
0
ENSTGUG00000011720
3889
protein_coding
chr1A
PYROXD1
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (EC 1.8.1.-) [Taeniopygia guttata]
null
unknown 0205P0028D09
PYROXD1
pyridine nucleotide-disulphide oxidoreductase
PYROXD1
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (EC 1.8.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8WU10]
7
"(7)xeno-refseq:PYROXD1(x5):3889,LOC100145712(x1):3889,ZGC:73254(x1):3889,human_blast,finalname,(1)ensembl:PYROXD1(chr1A):3889"
SB05028B1B05.f1
AGAGCAACCAAGTTCCCTATTAGAAAAACGATATCCCAATATTAGAGTTATACAATCTGG
0202P0019C06
0202P0019C06
0202P0019C06
1C2B3E1B0F234BBF9A76DB7EA696B353
F223FA9FF2C549EDA340F7B795768A72
Ill
2
2
SB02019A2B03.f1
0
0
ENSTGUG00000001417
3131
protein_coding
chr13
PTTG1
Securin (Pituitary tumor-transforming gene 1 protein)(hPTTG)(Tumor-transforming protein 1)(Esp1-associated protein) [Taeniopygia guttata]
null
unknown 0202P0019C06
PTTG1
pituitary tumor-transforming 1
PTTG1
Securin (Pituitary tumor-transforming gene 1 protein)(hPTTG)(Tumor-transforming protein 1)(Esp1-associated protein) [Taeniopygia guttata]
2
"(2):human_blast,finalname,(1)ensembl:PTTG1(chr13):3131"
SB02019A2B03.f1
ACATATGACAGATGTGTGAACATGGCTTCTTCACCAGCGAAGATTGAAGAGATTTCATGG
0203P0050F15
0203P0050F15
0203P0050F15
723F374E61F7447CADFF8CF47613FEA4
7B3E21C16B7F4906875F03F87C534A83
Ill
3
1
SB03050B1C08.f1
0
1
null
unknown 0203P0050F15
TRIP11
Thyroid receptor-interacting protein 11 (TRIP-11)(Golgi-associated microtubule-binding protein 210)(GMAP-210)(Trip230)(Clonal evolution-related gene on chromosome 14) [Source:UniProtKB/Swiss-Prot;Acc:Q15643]
1
(1):finalname
SB03050B1C08.f1
ATTCAGGAGGGAACTTCAGGAGGGAAGAAAGGGATGGAATACTTAAATGCCACAGTGCAA
0206P0012J11
0206P0012J11
0206P0012J11
09286EECE6F6462F974154B683A66902
A651EDE1DC174EAD91A2263E591F20F3
Ill
6
2
SB06012B1E06.f1
0
0
ENSTGUG00000011840
1668
protein_coding
chr7
SPOPL
Speckle-type POZ protein-like (HIB homolog 2)(Roadkill homolog 2) [Taeniopygia guttata]
null
unknown 0206P0012J11
SPOPL
speckle-type POZ protein-like
SPOP
Speckle-type POZ protein (HIB homolog 1)(Roadkill homolog 1) [Source:UniProtKB/Swiss-Prot;Acc:O43791]
8
"(8)xeno-refseq:SPOP(x8):1668,SPOPL(x4):1668,GM10696(x1):1668,LOC100135306(x1):1668,MGC154338(x1):1668,MGC81433(x1):1668,RGD1563667(x1):1668,ZGC:153365(x1):1668,CG9924(x1):1668,TDPOZ1(x1):1668,TDPOZ3(x1):1668,ATP4A(x5):1295,LOC733327(x1):1295,(2)ensembl:SPOPL(chr7):1668,ENSTGUG00000014779(chrUn):1295,human_blast,(1):finalname"
SB06012B1E06.f1
CAGGGCCAAATGACAAAATGAAGTGGTGCCTGAGAGTGAATCCAAAGGGATTAGATGATG
0203P0070P07
0203P0070P07
0203P0070P07
1B9B7B15A5A442BD8CB9947240719821
FAD6BECE832E4ECFAD3CDB33113EB0F2
Ill
3
2
SB03070B1H04.f1
0
0
ENSTGUG00000012845
4047
protein_coding
chr1
MED17
Mediator of RNA polymerase II transcription subunit 17 (Mediator complex subunit 17)(Cofactor required for Sp1 transcriptional activation subunit 6)(CRSP complex subunit 6)(Transcriptional coactivator CRSP77)(Vitamin D3 receptor-interacting protein comple [Taeniopygia guttata]
null
unknown 0203P0070P07
MED17
Mediator
MED17
Mediator
MED17
8
"(8)ensembl:MED17(chr1):4047,ENSTGUG00000014124(chrUn):2070,xeno-refseq:MED17(x5):4047,CRSP6(x2):4047,LOC100101325(x1):4047,human_blast,finalname"
SB03070B1H04.f1
ACCTCGGGACAGTCAATCTCTTTAAAAGACCTTTGCCAAAATCAAAACCAGGTTCTGCAC
0202P0043B09
0202P0043B09
0202P0043B09
68B6EA00710C4A2AAB134528986E5B1F
A565E1919F6240579BB7B0BA43DE9E8F
Ill
2
1
SB02043B1A05.f1
0
0
null
unknown 0202P0043B09
0
SB02043B1A05.f1
GTGATTCATGTTGGCATTTTATTTATAGGTCTAAAAGCTGTGCAGACAGCATAACTGGAT
0106P0001D01
0106P0001D01
0106P0001D01
48D6AD60C9604B92B0B1C1813B22894A
10443E1ED92A43A99B892C5105FE710D
Rock
6
1
0
0
null
unknown 0106P0001D01
0
--unknown
TGGATGCTTAAAACACAGTTGCTTGGTGAAAGAATTTAAATGGTTGTTCAATGAAGCTCA
44969 20818 Kbytes .Supplementary file Size Download File type/resource GPL9856 array probes fasta.txt.gz
1013.2 Kb
(ftp) (http) TXT
Less...
More...