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Series GSE100643 Query DataSets for GSE100643
Status Public on Oct 11, 2018
Title Centromeres license the mitotic condensation of yeast chromosome arms
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary During mitosis, chromatin condensation shapes chromosomes as separate, rigid and compacted sister-chromatids to facilitate their segregation. Here, we show that unlike wild type yeast chromosomes, non-chromosomal DNA circles and chromosomes lacking a centromere fail to condense during mitosis. Genetics and ChIP-seq experiments establish that the centromere functions in chromosome condensation upstream of the kinases Aurora B and Bub1. Downstream of Aurora B and Bub1, Shugoshin and the deacetylase Hst2 facilitated spreading of the condensation signal from the pericentromeric region to the chromosome arms. Targeting Aurora B to DNA circles or centromere-ablated chromosomes, or releasing Shugoshin from PP2A-dependent inhibition bypassed the centromere requirement for condensation and enhanced the mitotic stability of DNA circles. Our data indicate that yeast cells license in a centromere-dependent manner the chromosome-autonomous condensation of their chromatin, excluding non-centromeric DNA from this process and thereby inhibiting their propagation.
 
Overall design Analysis of histone modification in different experimental conditions
 
Contributor(s) Chymkowitch P, Kruitwagen T, Enserink J, Barral Y
Citation(s) 30318142
Submission date Jun 29, 2017
Last update date Jul 25, 2021
Contact name Pierre Chymkowitch
E-mail(s) pierrech@ibv.uio.no
Organization name University of Oslo
Department Biosciences
Lab Chymkowitch
Street address Blindernveien 31
City Oslo
ZIP/Postal code 0371
Country Norway
 
Platforms (1)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
Samples (51)
GSM2690154 H3 ChIP Ipl1-TetR E2
GSM2690155 H3pS10 ChIP Ipl1-TetR E2
GSM2690156 H3 ChIP Ipl1-TetR
Relations
BioProject PRJNA392397
SRA SRP110747

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100643_After_500bins.bed.gz 47.7 Kb (ftp)(http) BED
GSE100643_Before_500bins.bed.gz 48.1 Kb (ftp)(http) BED
GSE100643_ChromeInfo_after.txt.gz 171 b (ftp)(http) TXT
GSE100643_ChromeInfo_before.txt.gz 174 b (ftp)(http) TXT
GSE100643_I.fa.gz 69.8 Kb (ftp)(http) FA
GSE100643_II.fa.gz 248.1 Kb (ftp)(http) FA
GSE100643_III.fa.gz 96.7 Kb (ftp)(http) FA
GSE100643_IV.fa.gz 465.2 Kb (ftp)(http) FA
GSE100643_IVAfter.fa.gz 465.0 Kb (ftp)(http) FA
GSE100643_IVBefore.fa.gz 466.1 Kb (ftp)(http) FA
GSE100643_IX.fa.gz 134.0 Kb (ftp)(http) FA
GSE100643_MT.fa.gz 22.0 Kb (ftp)(http) FA
GSE100643_RAW.tar 1.7 Gb (http)(custom) TAR (of BW)
GSE100643_V.fa.gz 176.3 Kb (ftp)(http) FA
GSE100643_VI.fa.gz 82.6 Kb (ftp)(http) FA
GSE100643_VII.fa.gz 332.6 Kb (ftp)(http) FA
GSE100643_VIII.fa.gz 171.2 Kb (ftp)(http) FA
GSE100643_X.fa.gz 226.9 Kb (ftp)(http) FA
GSE100643_XI.fa.gz 203.5 Kb (ftp)(http) FA
GSE100643_XII.fa.gz 323.8 Kb (ftp)(http) FA
GSE100643_XIII.fa.gz 281.5 Kb (ftp)(http) FA
GSE100643_XIV.fa.gz 239.4 Kb (ftp)(http) FA
GSE100643_XV.fa.gz 333.1 Kb (ftp)(http) FA
GSE100643_XVI.fa.gz 289.3 Kb (ftp)(http) FA
GSE100643_genes_after.gtf.gz 584.7 Kb (ftp)(http) GTF
GSE100643_genes_before.gtf.gz 584.7 Kb (ftp)(http) GTF
GSE100643_genome_after.fa.gz 3.6 Mb (ftp)(http) FA
GSE100643_genome_before.fa.gz 3.6 Mb (ftp)(http) FA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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