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Series GSE100702 Query DataSets for GSE100702
Status Public on Aug 01, 2017
Title DNMT3A haploinsufficiency predisposes hematopoietic cells to myeloid malignancies
Organism Mus musculus
Experiment type Expression profiling by array
Summary DNMT3A (which encodes a de novo DNA methyltransferase) is one of the most frequently mutated genes in AML genomes. Point mutations at position R882 have been shown to cause a dominant negative loss of DNMT3A methylation activity, but 15% of DNMT3A mutations are predicted to produce truncated proteins, which could either have dominant negative activities, or cause loss-of-function and haploinsufficiency. We demonstrate that three of these mutants produce truncated, inactive proteins that do not dimerize with wild-type DNMT3A, strongly supporting the haploinsufficiency hypothesis. We therefore evaluated hematopoiesis in mice heterozygous for a constitutive null Dnmt3a mutation: unmanipulated mice developed myeloid skewing over time, and their stem/progenitor cells exhibited a long-term competitive transplantation advantage. Dnmt3a+/- mice spontaneously developed transplantable myeloid malignancies after a long latent period, and three of 12 tumors tested had cooperating mutations in the Ras- MAPK pathway. The residual Dnmt3a allele was neither mutated nor downregulated in tumors. The bone marrow cells of Dnmt3a+/- mice had a subtle but significant DNA hypomethylation phenotype that was not associated with gene dysregulation. These data demonstrate that haploinsufficiency for DNMT3A alters hematopoiesis, and predisposes mice (and probably humans) to myeloid malignancies by a mechanism that is not yet clear.
 
Overall design Mouse Microarray
 
Contributor(s) Cole C, Russler-Germain D, Ketkar S, Ley TJ
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Submission date Jun 30, 2017
Last update date Jul 25, 2021
Contact name Timothy J Ley
Organization name Washington University School of Medicine
Department Internal Medicine
Street address 660 S Euclid Avenue
City St Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL6193 [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version]
Samples (6)
GSM2691583 Wild-type_20678
GSM2691584 Dnmt3a +/-_20679
GSM2691585 Wild-type_20680
Relations
BioProject PRJNA392688

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Supplementary file Size Download File type/resource
GSE100702_RAW.tar 137.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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