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Series GSE102051 Query DataSets for GSE102051
Status Public on Apr 09, 2018
Title Genome-wide characterization of cis-acting DNA targets of Opaque11 in maize
Organism Zea mays
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Opaque11 (O11) is a bHLH transcription factor that plays important roles in maize endosperm development, nutrient metabolism, and stress response.
 
Overall design Examination of 15 days after pollination(DAP) wild type maize kernels with O11 specific antibody. o11 mutant seeds which have no accumulation of O11 protein were used as negtive control.Two independent biological replicates prepared at different times were used in this study.
 
Contributor(s) Feng F, Song R
Citation(s) 29436476
Submission date Jul 31, 2017
Last update date Dec 28, 2018
Contact name Liming Xu
E-mail(s) 17602190375@163.com
Phone 17602190375
Organization name Shanghai University
Street address 333 Nanchen Road
City Shanghai
ZIP/Postal code 200444
Country China
 
Platforms (1)
GPL17628 Illumina HiSeq 2500 (Zea mays)
Samples (4)
GSM2722435 rep1 WT ChIP
GSM2722436 rep1 o11 ChIP
GSM2722437 rep2 WT ChIP
Relations
BioProject PRJNA396496
SRA SRP114379

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102051_rep1_peaks.txt.gz 403.8 Kb (ftp)(http) TXT
GSE102051_rep1_summits.bed.gz 197.4 Kb (ftp)(http) BED
GSE102051_rep2_peaks.txt.gz 441.8 Kb (ftp)(http) TXT
GSE102051_rep2_summits.bed.gz 211.9 Kb (ftp)(http) BED
Raw data are available in SRA
Processed data are available on Series record

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