|
| Status |
Public on Sep 16, 2017 |
| Title |
Genome-wide maps of H3K9me3 with tethered heterochromatin machinery |
| Organism |
Neurospora crassa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Purpose: The goal of this study is to characterize the domain(s) of H3K9me3 induced by artifical localization of heterochromatin factors in wild-type and mutant backgrounds.
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| |
|
| Overall design |
Methods: ChIP-seq was performed on each sample (H3K9me3 ChIP; six samples total). qRT-PCR validation was done with SYBR Green reagent.
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| |
|
| Contributor(s) |
Gessaman JD, Selker EU |
| Citation(s) |
29078403 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 GM035690 |
Genetic Aspects of DNA Methylation |
UNIVERSITY OF OREGON |
Eric U. SELKER |
| T32 GM007413 |
Graduate Training in Genetics |
UNIVERSITY OF OREGON |
ALICE BARKAN |
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| |
| Submission date |
Sep 15, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Jordan David Gessaman |
| Organization name |
University of Oregon
|
| Department |
Biology, Institute of Molecular Biology
|
| Lab |
Selker
|
| Street address |
355 Streisinger Hall
|
| City |
Eugene |
| State/province |
OR |
| ZIP/Postal code |
97403 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL23150 |
Illumina HiSeq 4000 (Neurospora crassa) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA407574 |
| SRA |
SRP117758 |
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