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| Status |
Public on Feb 16, 2019 |
| Title |
Contractile activity-specific transcriptome response to acute endurance exercise and training in human skeletal muscle |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
In our study, we investigated for contractile activity-specific changes in the transcriptome in untrained and trained (after an aerobic training programme) human skeletal muscle. The second goal was to examine effect of aerobic training on gene expression in muscle at baseline (after long term training). Seven untrained males performed the one-legged knee extension exercise (for 60 min) with the same relative intensity before and after a 2 month aerobic training programme (1 h/day, 5/week). Biopsy samples were taken at rest (baseline condition, 48 h after exercise), 1 and 4 h after the one-legged exercise from m. vastus lateralis of either leg. Comparison of gene expression in exercised leg with that in non-exercised [control] leg allowed us to identify contractile activity-specific genes in both untrained and trained skeletal muscle, i.e., genes that play a key role in adapting to acute exercise, regardless of the level of fitness. RNA-sequencing (84 samples in total; ~47 million reads/sample) was performed by NextSeq 500 and HiSeq 2500 (Illumina). Two months aerobic training increased the aerobic capacity of the knee-extensor muscles (power at anaerobic threshold in the incremental one-legged and cycling tests), the maximum rate of ADP-stimulated mitochondrial respiration in permeabilized muscle fibres and amounts of oxidative phosphorylation proteins. Contractile activity-specific changes in the transcriptome in untrained and trained human skeletal muscle were revealed for the first time. After 2 month aerobic training, transcriptome responses specific for contractile activity in trained muscle substantially decreased relative to those in untrained muscle. We found out that adaptation of skeletal muscle to regular exercise is associated not only with a transient change in the transcriptome after each stress (acute exercise), but also with a marked change in baseline expression of many genes after repeated stress (e.g., long term training).
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| Overall design |
Seven untrained males performed the one-legged knee extension exercise (for 60 min) with the same relative intensity (at ~65% of the maximal power determined in the one-legged knee extension ramp test) before and after a 2 month aerobic training programme (1 h/day, 5/week). Biopsy samples were taken at rest (baseline condition, 48 h after exercise), 1 and 4 h after the one-legged exercise from m. vastus lateralis of either leg. Comparison of gene expression in exercised leg with that in non-exercised leg allowed us to identify genes that are directly related to contractile activity in human skeletal muscle, regardless of the level of fitness as well as a change in baseline transcriptome after long term training. RNA-sequencing (84 samples in total; ~47 million reads/sample) was performed by NextSeq 500 and HiSeq 2500 (Illumina).
Symbols in file names: ‘Ex’ – exercised leg; ‘NE’ – non-exercised leg; ‘baseline’ – prior to the one-legged exercise; ‘+1 h’ – 1 h after the one-legged exercise; ‘+4 h’ – 4 h after the one-legged exercise; ‘untrained’ – before a 2 month aerobic training programme; ‘trained’ – after a 2 month aerobic training programme; the last symbol in file name – subject’s ID.
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| Web link |
https://zenodo.org/record/2527633#.XCUAOmlS_Qx%5D
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| Contributor(s) |
Popov DV, Makhnovskii PA |
| Citation(s) |
30779632, 35869513 |
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| Submission date |
Oct 04, 2018 |
| Last update date |
Aug 03, 2022 |
| Contact name |
Pavel Makhnovsky |
| E-mail(s) |
maxpauel@gmail.com
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| Organization name |
Institute of Biomedical Problems of the Russian Academy of Sciences
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| Lab |
Laboratory of muscle physiology
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| Street address |
76A Khoroshevskoye shosse
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| City |
Moscow |
| ZIP/Postal code |
123007 |
| Country |
Russia |
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| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (84)
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| Relations |
| BioProject |
PRJNA494771 |
| SRA |
SRP163524 |
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