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Series GSE12217 Query DataSets for GSE12217
Status Public on Jul 23, 2009
Title Dietary soy effects on early rat mammary gland development
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary The linkage between nutrition and cancer prevention is an intriguing concept that is gaining widespread support based on epidemiological and animal studies. Multiple mechanisms likely underlie dietary protection against cancer, with effects influenced by target tissue response, cell-cell interactions and developmental context. Given the negative correlation between breast cancer incidence and intake of soy foods by Asian women, and the increasing consumption of soy protein-based formula by infants in the Western world, we have studied soy protein isolate (SPI) used in most infant formula as a paradigm to evaluate diet as a risk factor in a rodent model of mammary cancer. We previously demonstrated that lifetime exposure to dietary SPI reduced the incidence of N-methyl-N-nitrosourea-induced mammary tumors in young adult rats relative to those fed the control diet Casein (CAS). This protection was associated with increased tumor suppressor PTEN and decreased Wnt signaling component expression in mammary epithelial cells at postnatal day (PND) 50 prior to carcinogen insult. To identify early events contributing to mammary tumor suppression by diet, we used Affymetrix RAE230A GeneChips containing 14280 probe sets and the GeneSpring Robust Multi-array program to analyze genomic profiles of mammary glands of prepubertal (PND21) rats lifetime exposed to SPI or CAS.
 
Overall design Female SD rats are exposed to either casein/soy protein isolate based AIN-93G diet since gestation day 4 till weaning. Whole mammary gland were harvested for the gene analysis by microarray.
 
Contributor(s) Su Y, Xiao R, Simmen FA, Simmen RC
Citation(s) 19321580
Submission date Jul 23, 2008
Last update date Mar 03, 2017
Contact name Ying Su
E-mail(s) suying@uams.edu
Phone 501-364-2033
Fax 501-364-3161
Organization name UAMS
Department physiology
Street address 1120 Marshall St. South Campus
City Little Rock
State/province AR
ZIP/Postal code 72202
Country USA
 
Platforms (1)
GPL341 [RAE230A] Affymetrix Rat Expression 230A Array
Samples (10)
GSM307202 CAS 10
GSM307203 CAS 18
GSM307204 CAS 20
Relations
BioProject PRJNA113735

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12217_RAW.tar 25.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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